circle-seq

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nf-core / circdna

Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

workflow pipeline genomics nextflow dna circular nf-core extrachromosomal-circular-dna eccdna ecdna ampliconarchitect circle-seq ampliconsuite

Updated Jul 27, 2026
Python

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