eqtl

CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq

Trait association analyses on the Human Pangenome Reference

A snakemake pipeline for QTL mapping. Based on the GTEX pipeline

The python software to run mpeg framework.

Computational analysis of single-nucleus ATAC-seq data to identify cell-type-specific MASLD-associated regulatory peaks not captured by liver eQTLs and link them to candidate genes using ABC, developed for HUJI’s Computational Genomics course (76553)

Chromosome X Evidence Atlas — ranked, evidence-scored catalog of chrX genetic associations across human traits

Enformer magnitude–direction dissociation in brain expression prediction | Lee 2026 | doi:10.5281/zenodo.20754856

Nextflow pipeline for disease QTL mapping and follow up analyses

Statistical genetics workflow for QTL colocalization with GWAS summary statistics.

End-to-end TWAS pipeline for Alzheimer's disease integrating Kunkle et al. (2019) GWAS summary statistics with GTEx v8 MASHR brain eQTL models to identify causal genes via cross-tissue omnibus regression and functional pathway over-representation analysis.