genome-sequencing

Python library to facilitate genome assembly, annotation, and comparative genomics

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

viral-ngs: command line tools and wrappers for processing raw viral genomic data

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

Bioinformatics on GCP, AWS or Azure

TREDPARSE: HLI Short Tandem Repeat (STR) caller

Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data

Automated Tool for Global Screening Array analysis

Extensions for Clarity

Python program that reports nucleotide and dinucleotide frequencies of a genome

Bayesian Network Model Predicting Personal Phenotypes using Genome-Sequencing Data

A crash course in scATAC-seq data processing

A Snakemake workflow for the post-processing of microbial genome assemblies.

A Python script that align SARS-CoV-2 genomes identifying and reporting pointwise variations.

Python decoder for the HiC genome contact format