Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
rbioapi: User-Friendly R Interface to Biologic Web Services' API
Motif discovery for DNA sequences using multiobjective optimization and genetic programming.
Pipeline: Identification of cis-regulatory elements by matrix scoring and analysis of supporting empirical biological data.
Pipeline: Identification of cis-regulatory elements by matrix scoring and conservation.
race a noncoding disease variant to the transcription-factor motif it disrupts — from DNA sequence — using ChromBPNet, in-silico mutagenesis, and JASPAR. Built with Claude Science for the Life Sciences hackathon.
RESTful web service for storing and managing JASPAR TF motifs' information
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