lefser

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manastast / lefse_for_dummies.R

Beginner-friendly LEfSe/lefser pipeline for microbiome differential abundance analysis. Automatically formats input tables, builds a SummarizedExperiment, runs lefser, and generates publication-ready plots with a single command.

microbiome beginners biomarker-discovery summarizedexperiment lefse differential-abundance-analysis lefser

Updated Dec 8, 2025
R

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