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logical-modeling

Here are 3 public repositories matching this topic...

bnediction / bonesistools

Python toolkit from omics data to executable models

python bioinformatics systems-biology omics single-cell boolean-networks logical-modeling anndata gene-regulatory-networks mudata

Updated Sep 3, 2026
Python

bnediction / scbolt

Framework for Boolean network learning from multi-condition single-cell transcriptomes

bioinformatics systems-biology network-inference single-cell-rna-seq boolean-networks logical-modeling gene-regulatory-networks scbolt bonesis

Updated Aug 6, 2026
Python

Biosimulators_GINsim

biosimulators / Biosimulators_GINsim

GINsim biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

combine sed-ml logical-modeling omex biosimulators sbml-qual ginsim qualitative-modeling

Updated Dec 14, 2021
Python

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