msk-access

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Scripts for downstream analysis plotting of pipeline output

python r analysis data-analysis msk-access

Workflow that creates all the BAM files for the cfDNA assay based FASTQ file at MSK

umi bam msk-access

Workflow for collapsing of standard binary alignment mapping file generated by MSK-ACCESS

workflow duplex ctdna cwl-workflow bam-collapsing msk-access fgbio

Project to genotype SNV, INDEL and SV.

genotyping msk-access

Microsatellite Instability prediction for MSK-ACCESS cfDNA sequencing.MSK-ACCESS MSI calling tool

msi ctdna mskcc msk-access microsatellite-instability

Documentation for MSK-ACCESS workflows

msk-access

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