A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.
snakemakevariant-callingpopulation-geneticsvariant-callssnakemake-workflowpool-sequencingancient-dnaevolve-and-resequencegenomic-variant-calling
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Updated
Jun 24, 2025 - Python