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pseudo-alignment

Here are 2 public repositories matching this topic...

JensUweUlrich / Taxor

Fast and space-efficient taxonomic classification of long reads

bioinformatics taxonomy metagenomics long-read microbiome kmer em-algorithm taxonomic-classification refseq bioinf long-read-sequencing xor-filter taxonomic-profiling syncmer pseudo-alignment interleaved-xor-filter

Updated Jul 16, 2026
C++

spitzyo / genomic-pseudo-aligner

A Python bioinformatics tool for genomic pseudo-alignment, variant calling (SNPs), and coverage analysis.

python bioinformatics genomics compbio k-mer snp-calling pseudo-alignment

Updated Mar 11, 2026
Python

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