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pseudobulk

Here are 5 public repositories matching this topic...

noamteyssier / adpbulk

pseudobulking on an AnnData object

differential-expression scanpy anndata pseudobulk

Updated Jun 17, 2026
Python

Genome-Function-Initiative-Oxford / scATAC-Pseudobulk-Pipeline

Snakemake pipeline for scATAC-seq pseudobulk replicate creation

bioinformatics snakemake pipeline genomics genetics biology epigenetics cells atac-seq bam single-cell molecular-biology scatac-seq pseudobulk sinto

Updated Apr 5, 2026
Python

LightChainr / rheumlens

Cross-cohort benchmarking of frozen Geneformer and expression pseudobulk for donor-level SLE classification

single-cell-rna-seq pseudobulk systemic-lupus-erythematosus geneformer cross-cohort-transfer bioinformatics-benchmark

Updated Jul 27, 2026
Python

ethanfenton / scagg

Pseudobulk and metacell aggregation for single-cell RNA-seq (AnnData/scanpy + Seurat/R)

bioinformatics single-cell seurat scanpy pseudobulk metacells

Updated Jun 7, 2026
Python

hidenori-tani / paper-astrocyte-lncrna-atlas

Donor-level astrocyte lncRNA analysis: a replicated Alzheimer's disease signature that is inverted in ALS (Brain Research revision, single-author, Hidenori Tani, Yokohama University of Pharmacy)

als reproducibility single-cell alzheimers-disease lncrna astrocytes pseudobulk

Updated Aug 6, 2026
Python

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