quast

A transparent ONT bacterial assembly case study for an *Acinetobacter* barcode07 isolate, built not only to generate an assembly, but to show how raw reads become an interpretable genome through QC evidence, assembler comparison, graph checks, phylogeny, annotation, documented decisions, and honest limitations.

Genome assembly quality assessment using QUAST

🦇🧫📊Study on bat gut shotgun metagenomics

De novo genome assembly (MaSuRCA), reference-guided scaffolding (RagTag), and QC (QUAST, BUSCO, synteny analysis) for Humulus lupulus cv. Julian Gold

A modular, reproducible, and automated Bash pipeline for bacterial isolate whole-genome sequencing analysis from Illumina paired-end reads, including quality control, taxonomic classification, genome assembly, genome characterization, and coverage estimation.

A modular Nextflow DSL2 pipeline for reproducible plant de novo genome and transcriptome assembly, quality control, validation, and functional analysis.

Reusable comparative bacterial genomics pipeline for assembled bacterial genome FASTA files using QUAST, Bakta, FastANI, Panaroo, and FastTree.

Montagem de genoma bacteriano: Trimmomatic, SPAdes, QUAST, Prokka, BLAST

QUAST assembly assessment using a reference genome.

Run multiple metagenome filtering programs using Docker containers

reproducible Snakemake pipeline for bacterial hybrid assembly.

The repository contains a comprehensive pipeline for genome assembly and quality assessment, designed for genomic data analysis. It integrates various bioinformatics tools for accurate genome assembly.

[a.a. 24/25] C. Coscarelli, M. Santoriello

Plastr — a plaster for your assembly. Bandage-style graph visualisation, QUAST-style QC, and reference-guided scaffolding you can export. Validated against both on real bacterial genomes.

Reusable bacterial genome analysis pipeline for paired-end FASTQ data using FastQC, fastp, SPAdes, QUAST, Prokka, and MultiQC.

Automated Bash pipeline for hybrid de novo bacterial genome assembly, combining Oxford Nanopore (ONT) and Illumina reads with QC, polishing (POLCA), and evaluation (QUAST).

Pipeline bioinformático modular para ensamblaje, evaluación y anotación de genomas bacterianos mediante herramientas reproducibles basadas en Conda.

Docker container for W2RAP based on CentOS

CompGen Labs