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simbiology
Here are 5 public repositories matching this topic...
App for computing local aliasing scores for parameter fitting
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Jun 11, 2019
This was the result of the 2018 UMaryland iGEM team's research efforts into PET plastic degradation by PETase production from E. coli and the creation of a protocatechuate (PCA) and terephthalate (TPA) detector. The model runs in MATLAB on SimBiology.
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Mar 17, 2026
An MCP server providing AI assistants with access to MATLAB SimBiology for modelling, simulating, and analyzing biological systems
pythonbioinformaticssimulationmcpmatlabsystems-biologycomputational-biologydrug-discoverypharmacokineticsai-agentsclaudemathematical-modelingpharmacodynamicspkpdbiological-modelingmatlab-enginesimbiologyllmmodel-context-protocolfastmcp
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Jul 24, 2026 - Python
Contains the simbiology files to run the models in the publication
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Sep 1, 2025
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