smart-seq

Here are 3 public repositories matching this topic...

FullLengthFanatic / scnoisemeter

Platform-agnostic quantification of technical noise in single-cell RNA-seq. Supports ONT, PacBio/Kinnex, and short-read 10x / BD Rhapsody / Smart-seq BAMs

python cli bioinformatics quality-control rna-seq pacbio scrna-seq bam single-cell 10xgenomics ont long-read-sequencing smart-seq artifact-detection bd-rhapsody technical-noise

Updated Aug 11, 2026
Python

Prokash21 / Celltypes-Patchseq-Epilepsy

Star

Link gene expression to electrophysiology with interpretable models

machine-learning electrophysiology neuroinformatics transcriptomics single-cell allensdk patchseq smart-seq

Updated Oct 31, 2025
Python

rachadele / download-geo-fastqs

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Download fastqs or supplementary files from GEO and upload to hca-util bucket

bam-files geo public-data single-cell sra 10x-genomics fastq-files human-cell-atlas smart-seq2 smart-seq

Updated Mar 26, 2024
Shell

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