Treangen Lab

Ultrafast identification of signature sequences in microbial genomes

causal inference from longitudinal gut microbiome profiles: interpretable NMF factors, an identifiability screen that runs before any effect is fit, and lagged within patient effect estimates.

Ultra-rapid detection of viral variants directly from sequencing data

repository for scripts, figures, and result tables of bakeoff evaluations

LLM accessible long-read metagenomics pipeline with best practices

Abundance analysis tool for short-read metagenomics

Tranform DNA sequences using the Min-Frame Transformation (MFT)

Repository of analyses for mft paper