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@tskit-dev

Tskit developers

Software for the creation and analysis of tree-sequences.

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  1. tskittskitPublic

    Population-scale Ancestral Recombination Graph (ARG) library

    Python 189 84

  2. msprimemsprimePublic

    Simulate ARGs and genomic sequence data using population genetic models

    Python 217 92

  3. tsinfertsinferPublic

    Infer a tree sequence from genetic variation data.

    Python 65 18

  4. tsdatetsdatePublic

    Infer the age of ancestral nodes in a tree sequence.

    Python 27 12

  5. tutorialstutorialsPublic

    A set of tutorials for msprime and tskit.

    Jupyter Notebook 21 19

  6. tsziptszipPublic

    Gzip-like compression for tskit tree sequences

    Python 5 7

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