BranchesTags

Latest commit

History

5 Commits

Folders and files

NameName
Last commit message
Last commit date
.idea
.idea
samples
samples
src
src
.gitattributes
.gitattributes
.gitignore
.gitignore
FastaFileReader.iml
FastaFileReader.iml
README.md
README.md

Repository files navigation

FastaFileReader

FastaFileReader helps to process the fasta files

Running the application

Application expects two input params.

First argument is comma seperated file names to be processed.

Second argument is an Integer, it is the number of threads in the pool.

Input validation

Application validates the input arguments, application silently returns if the required number of arguments are not provided.

Application takes the default value of 1 if invalid input is provided for the second argument.

Application validates the input file names and generates REPORT.TXT with default value of 0 for the FILE_CNT,SEQUENCE_CNT and BASE_CNT if there is no valid input file is provided.

Application will try to process the input file if it is a valid gzip file. If the input is not a gzip file, that file will be ignored. For example, if two input files are provided out of which one is valid gzip file and other one is an invalid file. After completing the execution, in REPORT.TXT we will see file count as one instead of two as the second file is an invalid file.

Assumptions

  • Not handling the comments in input fasta files
  • Not used any logging frameworks

About

No description, website, or topics provided.

Resources

Readme
Activity

Stars

0 stars

Watchers

1 watching

Forks

0 forks
Report repository

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

Skip to content
BranchesTags
Latest commit
History
5 Commits
Folders and files
NameName
Last commit message
Last commit date
.idea
.idea
samples
samples
src
src
.gitattributes
.gitattributes
.gitignore
.gitignore
FastaFileReader.iml
FastaFileReader.iml
README.md
README.md
Repository files navigation
FastaFileReader
FastaFileReader helps to process the fasta files
Running the application
Application expects two input params.
First argument is comma seperated file names to be processed.
Second argument is an Integer, it is the number of threads in the pool.
Input validation
Application validates the input arguments, application silently returns if the required number of arguments are not provided.
Application takes the default value of 1 if invalid input is provided for the second argument.
Application validates the input file names and generates REPORT.TXT with default value of 0 for the FILE_CNT,SEQUENCE_CNT	and BASE_CNT if there is no valid input file is provided.
Application will try to process the input file if it is a valid gzip file. If the input is not a gzip file, that file will be ignored.
For example, if two input files are provided out of which one is valid gzip file and other one is an invalid file. After completing the execution, in REPORT.TXT we will see file count as one instead of two as the second file is an invalid file.
Assumptions
  • Not handling the comments in input fasta files
  • Not used any logging frameworks
About
No description, website, or topics provided.
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Latest commit
History
5 Commits
Folders and files
NameName
Last commit message
Last commit date
.idea
.idea
samples
samples
src
src
.gitattributes
.gitattributes
.gitignore
.gitignore
FastaFileReader.iml
FastaFileReader.iml
README.md
README.md
Repository files navigation
FastaFileReader
FastaFileReader helps to process the fasta files
Running the application
Application expects two input params.
First argument is comma seperated file names to be processed.
Second argument is an Integer, it is the number of threads in the pool.
Input validation
Application validates the input arguments, application silently returns if the required number of arguments are not provided.
Application takes the default value of 1 if invalid input is provided for the second argument.
Application validates the input file names and generates REPORT.TXT with default value of 0 for the FILE_CNT,SEQUENCE_CNT	and BASE_CNT if there is no valid input file is provided.
Application will try to process the input file if it is a valid gzip file. If the input is not a gzip file, that file will be ignored.
For example, if two input files are provided out of which one is valid gzip file and other one is an invalid file. After completing the execution, in REPORT.TXT we will see file count as one instead of two as the second file is an invalid file.
Assumptions
  • Not handling the comments in input fasta files
  • Not used any logging frameworks
About
No description, website, or topics provided.
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Latest commit
History
5 Commits
Folders and files
NameName
Last commit message
Last commit date
.idea
.idea
samples
samples
src
src
.gitattributes
.gitattributes
.gitignore
.gitignore
FastaFileReader.iml
FastaFileReader.iml
README.md
README.md
Repository files navigation
FastaFileReader
FastaFileReader helps to process the fasta files
Running the application
Application expects two input params.
First argument is comma seperated file names to be processed.
Second argument is an Integer, it is the number of threads in the pool.
Input validation
Application validates the input arguments, application silently returns if the required number of arguments are not provided.
Application takes the default value of 1 if invalid input is provided for the second argument.
Application validates the input file names and generates REPORT.TXT with default value of 0 for the FILE_CNT,SEQUENCE_CNT	and BASE_CNT if there is no valid input file is provided.
Application will try to process the input file if it is a valid gzip file. If the input is not a gzip file, that file will be ignored.
For example, if two input files are provided out of which one is valid gzip file and other one is an invalid file. After completing the execution, in REPORT.TXT we will see file count as one instead of two as the second file is an invalid file.
Assumptions
  • Not handling the comments in input fasta files
  • Not used any logging frameworks
About
No description, website, or topics provided.
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
BranchesTags
Latest commit
History
5 Commits
Folders and files
NameName
Last commit message
Last commit date
.idea
.idea
samples
samples
src
src
.gitattributes
.gitattributes
.gitignore
.gitignore
FastaFileReader.iml
FastaFileReader.iml
README.md
README.md
Repository files navigation
FastaFileReader
FastaFileReader helps to process the fasta files
Running the application
Application expects two input params.
First argument is comma seperated file names to be processed.
Second argument is an Integer, it is the number of threads in the pool.
Input validation
Application validates the input arguments, application silently returns if the required number of arguments are not provided.
Application takes the default value of 1 if invalid input is provided for the second argument.
Application validates the input file names and generates REPORT.TXT with default value of 0 for the FILE_CNT,SEQUENCE_CNT	and BASE_CNT if there is no valid input file is provided.
Application will try to process the input file if it is a valid gzip file. If the input is not a gzip file, that file will be ignored.
For example, if two input files are provided out of which one is valid gzip file and other one is an invalid file. After completing the execution, in REPORT.TXT we will see file count as one instead of two as the second file is an invalid file.
Assumptions
  • Not handling the comments in input fasta files
  • Not used any logging frameworks
About
No description, website, or topics provided.
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Latest commit
History
5 Commits
Folders and files
NameName
Last commit message
Last commit date
.idea
.idea
samples
samples
src
src
.gitattributes
.gitattributes
.gitignore
.gitignore
FastaFileReader.iml
FastaFileReader.iml
README.md
README.md
Repository files navigation
FastaFileReader
FastaFileReader helps to process the fasta files
Running the application
Application expects two input params.
First argument is comma seperated file names to be processed.
Second argument is an Integer, it is the number of threads in the pool.
Input validation
Application validates the input arguments, application silently returns if the required number of arguments are not provided.
Application takes the default value of 1 if invalid input is provided for the second argument.
Application validates the input file names and generates REPORT.TXT with default value of 0 for the FILE_CNT,SEQUENCE_CNT	and BASE_CNT if there is no valid input file is provided.
Application will try to process the input file if it is a valid gzip file. If the input is not a gzip file, that file will be ignored.
For example, if two input files are provided out of which one is valid gzip file and other one is an invalid file. After completing the execution, in REPORT.TXT we will see file count as one instead of two as the second file is an invalid file.
Assumptions
  • Not handling the comments in input fasta files
  • Not used any logging frameworks
About
No description, website, or topics provided.
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Latest commit
History
5 Commits
Folders and files
NameName
Last commit message
Last commit date
.idea
.idea
samples
samples
src
src
.gitattributes
.gitattributes
.gitignore
.gitignore
FastaFileReader.iml
FastaFileReader.iml
README.md
README.md
Repository files navigation
FastaFileReader
FastaFileReader helps to process the fasta files
Running the application
Application expects two input params.
First argument is comma seperated file names to be processed.
Second argument is an Integer, it is the number of threads in the pool.
Input validation
Application validates the input arguments, application silently returns if the required number of arguments are not provided.
Application takes the default value of 1 if invalid input is provided for the second argument.
Application validates the input file names and generates REPORT.TXT with default value of 0 for the FILE_CNT,SEQUENCE_CNT	and BASE_CNT if there is no valid input file is provided.
Application will try to process the input file if it is a valid gzip file. If the input is not a gzip file, that file will be ignored.
For example, if two input files are provided out of which one is valid gzip file and other one is an invalid file. After completing the execution, in REPORT.TXT we will see file count as one instead of two as the second file is an invalid file.
Assumptions
  • Not handling the comments in input fasta files
  • Not used any logging frameworks
About
No description, website, or topics provided.
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
BranchesTags
Latest commit
History
5 Commits
Folders and files
NameName
Last commit message
Last commit date
.idea
.idea
samples
samples
src
src
.gitattributes
.gitattributes
.gitignore
.gitignore
FastaFileReader.iml
FastaFileReader.iml
README.md
README.md
Repository files navigation
FastaFileReader
FastaFileReader helps to process the fasta files
Running the application
Application expects two input params.
First argument is comma seperated file names to be processed.
Second argument is an Integer, it is the number of threads in the pool.
Input validation
Application validates the input arguments, application silently returns if the required number of arguments are not provided.
Application takes the default value of 1 if invalid input is provided for the second argument.
Application validates the input file names and generates REPORT.TXT with default value of 0 for the FILE_CNT,SEQUENCE_CNT	and BASE_CNT if there is no valid input file is provided.
Application will try to process the input file if it is a valid gzip file. If the input is not a gzip file, that file will be ignored.
For example, if two input files are provided out of which one is valid gzip file and other one is an invalid file. After completing the execution, in REPORT.TXT we will see file count as one instead of two as the second file is an invalid file.
Assumptions
  • Not handling the comments in input fasta files
  • Not used any logging frameworks
About
No description, website, or topics provided.
Resources
Readme
Activity
Stars
0 stars
Watchers
1 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages