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SEEK

License

Copyright © 2009-2018, University of Manchester and HITS gGmbH

BSD 3-clause

About SEEK

The SEEK platform is a web-based resource for sharing heterogeneous scientific research datasets,models or simulations, processes and research outcomes. It preserves associations between them, along with information about the people and organisations involved. Underpinning SEEK is the ISA infrastructure, a standard format for describing how individual experiments are aggregated into wider studies and investigations. Within SEEK, ISA has been extended and is configurable to allow the structure to be used outside of Biology.

SEEK is incorporating semantic technology allowing sophisticated queries over the data, yet without getting in the way of your users.

For an example of SEEK please visit our Demo.

To see SEEK being used for real science, as part of FAIRDOM please visit FAIRDOM SEEK

For more information please visit: SEEK for Science

FAIRDOM

SEEK is being developed and funded as part of the FAIRDOM initiative. For more information please visit: FAIRDOM.

Installation

We recommend installing SEEK on Debian or Ubuntu.

To install the latest release please visit: SEEK install guide

For details about other distributions and installing on Mac OS X please visit: Other distributions guide

The documentation is available on the ghpages branch.

Contacting Us

For details about how to contact us, to raise bugs or offer suggestion, please visit Contacting Us

Contributing to SEEK

In general :

  1. Fork it ( https://github.com/seek4science/seek/fork )
  2. Create your feature branch (git checkout -b my-new-feature)
  3. Commit your changes (git commit -am 'Add some feature')
  4. Push to the branch (git push origin my-new-feature)
  5. Create a new Pull Request

For more details on how and what you can contribute to SEEK please visit Contributing

About

For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.

www.seek4science.org

Resources

Readme
License

Contributing

Contributing
Activity

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, 'i'); if (__m === '*' || __re.test(location.href)) { // Add copy buttons to all 
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(function() {
function addCopyButtons() {
document.querySelectorAll('pre code').forEach(function(codeBlock) {
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btn.textContent = 'Copy';
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btn.onmouseover = function() { this.style.opacity = '1'; };
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})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

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Repository files navigation
Build Status
SEEK
License
Copyright © 2009-2018, University of Manchester and HITS gGmbH
BSD 3-clause
About SEEK
The SEEK platform is a web-based resource for sharing heterogeneous scientific research datasets,models or simulations, processes and research outcomes. It preserves associations between them, along with information about the people and organisations involved.
Underpinning SEEK is the ISA infrastructure, a standard format for describing how individual experiments are aggregated into wider studies and investigations. Within SEEK, ISA has been extended and is configurable to allow the structure to be used outside of Biology.
SEEK is incorporating semantic technology allowing sophisticated queries over the data, yet without getting in the way of your users.
For an example of SEEK please visit our Demo.
To see SEEK being used for real science, as part of FAIRDOM please visit FAIRDOM SEEK
For more information please visit: SEEK for Science
FAIRDOM
SEEK is being developed and funded as part of the FAIRDOM initiative.
For more information please visit: FAIRDOM.
Installation
We recommend installing SEEK on Debian or Ubuntu.
To install the latest release please visit:
SEEK install guide
For details about other distributions and installing on Mac OS X please visit:
Other distributions guide
The documentation is available on the ghpages branch.
Contacting Us
For details about how to contact us, to raise bugs or offer suggestion, please visit Contacting Us
Contributing to SEEK
In general :
  1. Fork it ( https://github.com/seek4science/seek/fork )
  2. Create your feature branch (git checkout -b my-new-feature)
  3. Commit your changes (git commit -am 'Add some feature')
  4. Push to the branch (git push origin my-new-feature)
  5. Create a new Pull Request
For more details on how and what you can contribute to SEEK please visit Contributing
About
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
www.seek4science.org
Resources
Readme
License
Contributing
Contributing
Activity
Stars
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Watchers
1 watching
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Force GitHub README to respect dark mode
(function() {
var style = document.createElement('style');
style.textContent = '
.markdown-body {
color-scheme: dark light;
}
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';
document.head.appendChild(style);
})();
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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Repository files navigation
Build Status
SEEK
License
Copyright © 2009-2018, University of Manchester and HITS gGmbH
BSD 3-clause
About SEEK
The SEEK platform is a web-based resource for sharing heterogeneous scientific research datasets,models or simulations, processes and research outcomes. It preserves associations between them, along with information about the people and organisations involved.
Underpinning SEEK is the ISA infrastructure, a standard format for describing how individual experiments are aggregated into wider studies and investigations. Within SEEK, ISA has been extended and is configurable to allow the structure to be used outside of Biology.
SEEK is incorporating semantic technology allowing sophisticated queries over the data, yet without getting in the way of your users.
For an example of SEEK please visit our Demo.
To see SEEK being used for real science, as part of FAIRDOM please visit FAIRDOM SEEK
For more information please visit: SEEK for Science
FAIRDOM
SEEK is being developed and funded as part of the FAIRDOM initiative.
For more information please visit: FAIRDOM.
Installation
We recommend installing SEEK on Debian or Ubuntu.
To install the latest release please visit:
SEEK install guide
For details about other distributions and installing on Mac OS X please visit:
Other distributions guide
The documentation is available on the ghpages branch.
Contacting Us
For details about how to contact us, to raise bugs or offer suggestion, please visit Contacting Us
Contributing to SEEK
In general :
  1. Fork it ( https://github.com/seek4science/seek/fork )
  2. Create your feature branch (git checkout -b my-new-feature)
  3. Commit your changes (git commit -am 'Add some feature')
  4. Push to the branch (git push origin my-new-feature)
  5. Create a new Pull Request
For more details on how and what you can contribute to SEEK please visit Contributing
About
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
www.seek4science.org
Resources
Readme
License
Contributing
Contributing
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Highlight search terms from Google/DuckDuckGo/Bing referrer
(function() {
var ref = document.referrer;
var terms = [];
if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {
var url = new URL(ref);
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terms = q.split(/\s+/).filter(function(t) { return t.length > 2; });
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if (terms.length === 0) return;
var style = document.createElement('style');
style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';
document.head.appendChild(style);
function highlight(node) {
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highlight(document.body);
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observer.observe(document.body, { childList: true, subtree: true });
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}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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Repository files navigation
Build Status
SEEK
License
Copyright © 2009-2018, University of Manchester and HITS gGmbH
BSD 3-clause
About SEEK
The SEEK platform is a web-based resource for sharing heterogeneous scientific research datasets,models or simulations, processes and research outcomes. It preserves associations between them, along with information about the people and organisations involved.
Underpinning SEEK is the ISA infrastructure, a standard format for describing how individual experiments are aggregated into wider studies and investigations. Within SEEK, ISA has been extended and is configurable to allow the structure to be used outside of Biology.
SEEK is incorporating semantic technology allowing sophisticated queries over the data, yet without getting in the way of your users.
For an example of SEEK please visit our Demo.
To see SEEK being used for real science, as part of FAIRDOM please visit FAIRDOM SEEK
For more information please visit: SEEK for Science
FAIRDOM
SEEK is being developed and funded as part of the FAIRDOM initiative.
For more information please visit: FAIRDOM.
Installation
We recommend installing SEEK on Debian or Ubuntu.
To install the latest release please visit:
SEEK install guide
For details about other distributions and installing on Mac OS X please visit:
Other distributions guide
The documentation is available on the ghpages branch.
Contacting Us
For details about how to contact us, to raise bugs or offer suggestion, please visit Contacting Us
Contributing to SEEK
In general :
  1. Fork it ( https://github.com/seek4science/seek/fork )
  2. Create your feature branch (git checkout -b my-new-feature)
  3. Commit your changes (git commit -am 'Add some feature')
  4. Push to the branch (git push origin my-new-feature)
  5. Create a new Pull Request
For more details on how and what you can contribute to SEEK please visit Contributing
About
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
www.seek4science.org
Resources
Readme
License
Contributing
Contributing
Activity
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Strip utm_, fbclid, gclid, etc. from all links on page
(function() {
var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',
'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',
'ref', 'ref_src', 'source', 'medium', 'campaign'];
function cleanUrl(url) {
try {
var u = new URL(url, window.location.origin);
var changed = false;
trackingParams.forEach(function(p) {
if (u.searchParams.has(p)) {
u.searchParams.delete(p);
changed = true;
}
});
return changed ? u.toString() : url;
} catch (e) {
return url;
}
}
function cleanLinks() {
document.querySelectorAll('a[href]').forEach(function(a) {
var clean = cleanUrl(a.href);
if (clean !== a.href) a.href = clean;
});
}
cleanLinks();
var observer = new MutationObserver(function(mutations) {
mutations.forEach(function(m) {
m.addedNodes.forEach(function(node) {
if (node.nodeType === 1) {
if (node.tagName === 'A') cleanLinks();
node.querySelectorAll('a[href]').forEach(function(a) {
var clean = cleanUrl(a.href);
if (clean !== a.href) a.href = clean;
});
}
});
});
});
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

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Repository files navigation
Build Status
SEEK
License
Copyright © 2009-2018, University of Manchester and HITS gGmbH
BSD 3-clause
About SEEK
The SEEK platform is a web-based resource for sharing heterogeneous scientific research datasets,models or simulations, processes and research outcomes. It preserves associations between them, along with information about the people and organisations involved.
Underpinning SEEK is the ISA infrastructure, a standard format for describing how individual experiments are aggregated into wider studies and investigations. Within SEEK, ISA has been extended and is configurable to allow the structure to be used outside of Biology.
SEEK is incorporating semantic technology allowing sophisticated queries over the data, yet without getting in the way of your users.
For an example of SEEK please visit our Demo.
To see SEEK being used for real science, as part of FAIRDOM please visit FAIRDOM SEEK
For more information please visit: SEEK for Science
FAIRDOM
SEEK is being developed and funded as part of the FAIRDOM initiative.
For more information please visit: FAIRDOM.
Installation
We recommend installing SEEK on Debian or Ubuntu.
To install the latest release please visit:
SEEK install guide
For details about other distributions and installing on Mac OS X please visit:
Other distributions guide
The documentation is available on the ghpages branch.
Contacting Us
For details about how to contact us, to raise bugs or offer suggestion, please visit Contacting Us
Contributing to SEEK
In general :
  1. Fork it ( https://github.com/seek4science/seek/fork )
  2. Create your feature branch (git checkout -b my-new-feature)
  3. Commit your changes (git commit -am 'Add some feature')
  4. Push to the branch (git push origin my-new-feature)
  5. Create a new Pull Request
For more details on how and what you can contribute to SEEK please visit Contributing
About
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
www.seek4science.org
Resources
Readme
License
Contributing
Contributing
Activity
Stars
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Watchers
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Report repository
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Auto-enable theater mode on YouTube
(function() {
function tryTheater() {
var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]');
if (btn && !btn.classList.contains('activated')) {
btn.click();
}
}
// Try immediately
tryTheater();
// Try after navigation (SPA)
var lastUrl = location.href;
setInterval(function() {
if (location.href !== lastUrl) {
lastUrl = location.href;
setTimeout(tryTheater, 500);
}
}, 1000);
// Also try on player load
var observer = new MutationObserver(tryTheater);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
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try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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SEEK
License
Copyright © 2009-2018, University of Manchester and HITS gGmbH
BSD 3-clause
About SEEK
The SEEK platform is a web-based resource for sharing heterogeneous scientific research datasets,models or simulations, processes and research outcomes. It preserves associations between them, along with information about the people and organisations involved.
Underpinning SEEK is the ISA infrastructure, a standard format for describing how individual experiments are aggregated into wider studies and investigations. Within SEEK, ISA has been extended and is configurable to allow the structure to be used outside of Biology.
SEEK is incorporating semantic technology allowing sophisticated queries over the data, yet without getting in the way of your users.
For an example of SEEK please visit our Demo.
To see SEEK being used for real science, as part of FAIRDOM please visit FAIRDOM SEEK
For more information please visit: SEEK for Science
FAIRDOM
SEEK is being developed and funded as part of the FAIRDOM initiative.
For more information please visit: FAIRDOM.
Installation
We recommend installing SEEK on Debian or Ubuntu.
To install the latest release please visit:
SEEK install guide
For details about other distributions and installing on Mac OS X please visit:
Other distributions guide
The documentation is available on the ghpages branch.
Contacting Us
For details about how to contact us, to raise bugs or offer suggestion, please visit Contacting Us
Contributing to SEEK
In general :
  1. Fork it ( https://github.com/seek4science/seek/fork )
  2. Create your feature branch (git checkout -b my-new-feature)
  3. Commit your changes (git commit -am 'Add some feature')
  4. Push to the branch (git push origin my-new-feature)
  5. Create a new Pull Request
For more details on how and what you can contribute to SEEK please visit Contributing
About
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
www.seek4science.org
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Readme
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, 'i');
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try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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Repository files navigation
Build Status
SEEK
License
Copyright © 2009-2018, University of Manchester and HITS gGmbH
BSD 3-clause
About SEEK
The SEEK platform is a web-based resource for sharing heterogeneous scientific research datasets,models or simulations, processes and research outcomes. It preserves associations between them, along with information about the people and organisations involved.
Underpinning SEEK is the ISA infrastructure, a standard format for describing how individual experiments are aggregated into wider studies and investigations. Within SEEK, ISA has been extended and is configurable to allow the structure to be used outside of Biology.
SEEK is incorporating semantic technology allowing sophisticated queries over the data, yet without getting in the way of your users.
For an example of SEEK please visit our Demo.
To see SEEK being used for real science, as part of FAIRDOM please visit FAIRDOM SEEK
For more information please visit: SEEK for Science
FAIRDOM
SEEK is being developed and funded as part of the FAIRDOM initiative.
For more information please visit: FAIRDOM.
Installation
We recommend installing SEEK on Debian or Ubuntu.
To install the latest release please visit:
SEEK install guide
For details about other distributions and installing on Mac OS X please visit:
Other distributions guide
The documentation is available on the ghpages branch.
Contacting Us
For details about how to contact us, to raise bugs or offer suggestion, please visit Contacting Us
Contributing to SEEK
In general :
  1. Fork it ( https://github.com/seek4science/seek/fork )
  2. Create your feature branch (git checkout -b my-new-feature)
  3. Commit your changes (git commit -am 'Add some feature')
  4. Push to the branch (git push origin my-new-feature)
  5. Create a new Pull Request
For more details on how and what you can contribute to SEEK please visit Contributing
About
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
www.seek4science.org
Resources
Readme
License
Contributing
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Universal Dark Mode - works on any site
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var enabled = true;
function applyDarkMode() {
if (!enabled) return;
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style = document.createElement('style');
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filter: invert(1) hue-rotate(180deg) !important;
}
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var style = document.getElementById('universal-dark-mode-style');
if (style) style.remove();
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if (e.altKey && e.shiftKey && e.key === 'D') {
e.preventDefault();
enabled = !enabled;
if (enabled) {
applyDarkMode();
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console.log('[Universal Dark Mode] Disabled');
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var observer = new MutationObserver(function(mutations) {
if (enabled && !document.getElementById('universal-dark-mode-style')) {
applyDarkMode();
}
});
observer.observe(document.head, { childList: true });
console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');
})();
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

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Repository files navigation
Build Status
SEEK
License
Copyright © 2009-2018, University of Manchester and HITS gGmbH
BSD 3-clause
About SEEK
The SEEK platform is a web-based resource for sharing heterogeneous scientific research datasets,models or simulations, processes and research outcomes. It preserves associations between them, along with information about the people and organisations involved.
Underpinning SEEK is the ISA infrastructure, a standard format for describing how individual experiments are aggregated into wider studies and investigations. Within SEEK, ISA has been extended and is configurable to allow the structure to be used outside of Biology.
SEEK is incorporating semantic technology allowing sophisticated queries over the data, yet without getting in the way of your users.
For an example of SEEK please visit our Demo.
To see SEEK being used for real science, as part of FAIRDOM please visit FAIRDOM SEEK
For more information please visit: SEEK for Science
FAIRDOM
SEEK is being developed and funded as part of the FAIRDOM initiative.
For more information please visit: FAIRDOM.
Installation
We recommend installing SEEK on Debian or Ubuntu.
To install the latest release please visit:
SEEK install guide
For details about other distributions and installing on Mac OS X please visit:
Other distributions guide
The documentation is available on the ghpages branch.
Contacting Us
For details about how to contact us, to raise bugs or offer suggestion, please visit Contacting Us
Contributing to SEEK
In general :
  1. Fork it ( https://github.com/seek4science/seek/fork )
  2. Create your feature branch (git checkout -b my-new-feature)
  3. Commit your changes (git commit -am 'Add some feature')
  4. Push to the branch (git push origin my-new-feature)
  5. Create a new Pull Request
For more details on how and what you can contribute to SEEK please visit Contributing
About
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
www.seek4science.org
Resources
Readme
License
Contributing
Contributing
Activity
Stars
0 stars
Watchers
1 watching
Forks
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Report repository
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Contributors
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