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  1. vectorized-enkf vectorized-enkfPublic

    A vectorised ensemble Kalman filter update, kept standalone so the numerical core can be read and tested on its own.

    Jupyter Notebook

  2. phd-thesis-index phd-thesis-indexPublic

    A map into every repository behind the dissertation on ensemble Kalman filter stacking of deep learners.

  3. menkf-ann-pul menkf-ann-pulPublic

    Predicting which complex sugar a bacterial gene cluster digests, with calibrated uncertainty from an ensemble Kalman filter stacker.

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  4. menkf-stacking-deepcdr menkf-stacking-deepcdrPublic

    Combining cancer drug-response models so predictions carry calibrated intervals, swept across omics inputs, ensemble size and prior variance.

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  5. menkf-dualgcn-deepcdr menkf-dualgcn-deepcdrPublic

    Does calibrated stacking survive when the models being combined are architecturally different? Two published drug-response models under one filter.

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  6. menkf-chembl-multivariate menkf-chembl-multivariatePublic

    Predicting several correlated chemical properties at once, combining SMILES-based and RDKit descriptor representations under one stacker.

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