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1. wc2019 wc2019Public

   Tutorial on modeling metabolic pathways with ODEs, from the EMBO Whole Cell Modeling summer school

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2. benchmark_microbiome_transformations benchmark_microbiome_transformationsPublic

   Code to reproduce the analyses from the paper "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases"

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3. polyester polyesterPublic

   Forked from alyssafrazee/polyester

   Bioconductor package "polyester", devel version. RNA-seq read simulator.

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4. vllorens.github.io vllorens.github.ioPublic

   Personal website of Veronica Llorens Rico

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5. syntheticGutCommunity syntheticGutCommunityPublic

   Code to reproduce the RNA-seq analysis from the paper "Mechanistic modeling identifies emergent behavior in a synthetic human gut community"

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6. metaester metaesterPublic

   Simulate metatranscriptomics datasets

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