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1. FunctionLab/wreath-frameworkFunctionLab/wreath-frameworkPublic

   code to run the Wreath methylation sequence model ML framework: training, evaluation, and prediction

   Python 2

2. FunctionLab/DaVinciFunctionLab/DaVinciPublic

   Deconvolving lAtent Variables for Integrated Niche Cluster Identification

   R 1 1

3. PLIERPLIERPublic

   Pathway-Level Information Extractor (PLIER): a generative model for gene expression data

   R 57 10

4. EPIANNEPIANNPublic

   Modeling Enhancer-Promoter Interactions with Attention-Based Neural Networks

   Python 9 7

5. NIFANIFAPublic

   Non-negative Independent Factor Analysis for single cell RNA-seq

   R 12 1

6. nclark-lab/RERconvergenclark-lab/RERconvergePublic

   Analysis of convergence between organismal traits and DNA/protein sequences

   HTML 71 34