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yohanesnuwara/README.md

Hei!

I live in Trondheim and work as senior data scientist at Aker BP ASA. Previously, I worked as software engineer at Whitson and data scientist at Prores AS, Whitson AS, and Asia Pulp and Paper. I've spent 5+ years working in this role for different industries in oil and gas, pulp and paper, and forestry. My core expertise is computer vision for subsurface core/cutting images, seabed mapping, and aerial drone/LiDAR photogrametry, with interests in LLM, AI engineering, and advanced machine learning models.

I use my GitHub mostly for educational purposes and OSS (open-source software) development. I like to help many university students and professionals to step their feet into Python programming.

Current Works and Interests

I am particularly interested in the use of agentic AI for science and engineering (one of them in geos). Here are my most recent works:

  • Boglodite: Agent for seismic interpretation
  • SciSandboxAI: Agent for scientific research and experiments
  • DEUP LLM (Research): Epistemic uncertainty quantification for LLMs using Direct Epistemic Uncertainty Prediction (DEUP) methodology
  • Knowledge graph from text and image embeddings (Research): Knowledge graph from embeddings for document retrieval

Open-Source Softwares for Geosciences

These are several Python libraries that I've developed over 5 years and I use to teach my students:

Library for geophysical data processing, such as gravity data anomaly separation using Fast Fourier Transform / Second Vertical Derivative (FFT/SVD), seismic data attribute calculation, interactive viewer, Amplitude-versus-offset (AVO) modelling, seismic inversion, and rock physics.

🛢️ PyReservoir

Library for reservoir engineering analysis, such as Original-oil-in-place (OOIP) contouring and calculation, Pressure-Volume-Temperature (PVT) correlation, material balance analysis for gas (dry gas and water-drive) and oil reservoirs (saturated and undersaturated), well test simulation and interpretation, and Decline Curve Analysis (DCA).

Library for visualization and analysis of well log data, including triple combo visualization, neutron density plot, and log interpolation.

This repository stores codes, data, and materials of trainings that I give to students. This is a perfect place to learn Python.

PyMRST

DASLab

MLGeo

Pinned Loading

  1. python-bootcamp-for-geoengineerspython-bootcamp-for-geoengineersPublic

    Python source codes and notebooks from my courses I've given to SPEs and in Marietta College, Ohio, US

    Jupyter Notebook 90 66

  2. DASLabDASLabPublic

    Distributed acoustic sensing lab developed @ RITE CO2 Storage Research Group

    Jupyter Notebook 77 24

  3. pyreservoirpyreservoirPublic

    Python utilities for reservoir engineering calculations

    Jupyter Notebook 175 102

  4. MLGeoMLGeoPublic

    Exploration of machine learning in geoscience use cases

    Lasso 88 60

  5. GeoPySicsGeoPySicsPublic

    Python implementations in geophysical methods: seismic and gravity

    Jupyter Notebook 104 44

  6. pyMRSTpyMRSTPublic

    A wrapper to run MATLAB Reservoir Simulation Toolbox (MRST) in Python

    Jupyter Notebook 50 18

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yohanesnuwara (yohanesnuwara) · GitHub
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yohanesnuwara/README.md

Hei!

I live in Trondheim and work as senior data scientist at Aker BP ASA. Previously, I worked as software engineer at Whitson and data scientist at Prores AS, Whitson AS, and Asia Pulp and Paper. I've spent 5+ years working in this role for different industries in oil and gas, pulp and paper, and forestry. My core expertise is computer vision for subsurface core/cutting images, seabed mapping, and aerial drone/LiDAR photogrametry, with interests in LLM, AI engineering, and advanced machine learning models.

I use my GitHub mostly for educational purposes and OSS (open-source software) development. I like to help many university students and professionals to step their feet into Python programming.

Current Works and Interests

I am particularly interested in the use of agentic AI for science and engineering (one of them in geos). Here are my most recent works:

  • Boglodite: Agent for seismic interpretation
  • SciSandboxAI: Agent for scientific research and experiments
  • DEUP LLM (Research): Epistemic uncertainty quantification for LLMs using Direct Epistemic Uncertainty Prediction (DEUP) methodology
  • Knowledge graph from text and image embeddings (Research): Knowledge graph from embeddings for document retrieval

Open-Source Softwares for Geosciences

These are several Python libraries that I've developed over 5 years and I use to teach my students:

Library for geophysical data processing, such as gravity data anomaly separation using Fast Fourier Transform / Second Vertical Derivative (FFT/SVD), seismic data attribute calculation, interactive viewer, Amplitude-versus-offset (AVO) modelling, seismic inversion, and rock physics.

🛢️ PyReservoir

Library for reservoir engineering analysis, such as Original-oil-in-place (OOIP) contouring and calculation, Pressure-Volume-Temperature (PVT) correlation, material balance analysis for gas (dry gas and water-drive) and oil reservoirs (saturated and undersaturated), well test simulation and interpretation, and Decline Curve Analysis (DCA).

Library for visualization and analysis of well log data, including triple combo visualization, neutron density plot, and log interpolation.

This repository stores codes, data, and materials of trainings that I give to students. This is a perfect place to learn Python.

PyMRST

DASLab

MLGeo

Pinned Loading

  1. python-bootcamp-for-geoengineerspython-bootcamp-for-geoengineersPublic

    Python source codes and notebooks from my courses I've given to SPEs and in Marietta College, Ohio, US

    Jupyter Notebook 90 66

  2. DASLabDASLabPublic

    Distributed acoustic sensing lab developed @ RITE CO2 Storage Research Group

    Jupyter Notebook 77 24

  3. pyreservoirpyreservoirPublic

    Python utilities for reservoir engineering calculations

    Jupyter Notebook 175 102

  4. MLGeoMLGeoPublic

    Exploration of machine learning in geoscience use cases

    Lasso 88 60

  5. GeoPySicsGeoPySicsPublic

    Python implementations in geophysical methods: seismic and gravity

    Jupyter Notebook 104 44

  6. pyMRSTpyMRSTPublic

    A wrapper to run MATLAB Reservoir Simulation Toolbox (MRST) in Python

    Jupyter Notebook 50 18

, 'i'); if (__m === '*' || __re.test(location.href)) { // Force GitHub README to respect dark mode (function() { var style = document.createElement('style'); style.textContent = ' .markdown-body { color-scheme: dark light; } .markdown-body pre { background: #161b22 !important; } .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; } .markdown-body table th, .markdown-body table td { border-color: #30363d !important; } .markdown-body img { background: #0d1117; } .markdown-body blockquote { border-left-color: #8b949e; } .markdown-body hr { border-color: #30363d; } '; document.head.appendChild(style); })(); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' yohanesnuwara (yohanesnuwara) · GitHub
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yohanesnuwara/README.md

Hei!

I live in Trondheim and work as senior data scientist at Aker BP ASA. Previously, I worked as software engineer at Whitson and data scientist at Prores AS, Whitson AS, and Asia Pulp and Paper. I've spent 5+ years working in this role for different industries in oil and gas, pulp and paper, and forestry. My core expertise is computer vision for subsurface core/cutting images, seabed mapping, and aerial drone/LiDAR photogrametry, with interests in LLM, AI engineering, and advanced machine learning models.

I use my GitHub mostly for educational purposes and OSS (open-source software) development. I like to help many university students and professionals to step their feet into Python programming.

Current Works and Interests

I am particularly interested in the use of agentic AI for science and engineering (one of them in geos). Here are my most recent works:

  • Boglodite: Agent for seismic interpretation
  • SciSandboxAI: Agent for scientific research and experiments
  • DEUP LLM (Research): Epistemic uncertainty quantification for LLMs using Direct Epistemic Uncertainty Prediction (DEUP) methodology
  • Knowledge graph from text and image embeddings (Research): Knowledge graph from embeddings for document retrieval

Open-Source Softwares for Geosciences

These are several Python libraries that I've developed over 5 years and I use to teach my students:

Library for geophysical data processing, such as gravity data anomaly separation using Fast Fourier Transform / Second Vertical Derivative (FFT/SVD), seismic data attribute calculation, interactive viewer, Amplitude-versus-offset (AVO) modelling, seismic inversion, and rock physics.

🛢️ PyReservoir

Library for reservoir engineering analysis, such as Original-oil-in-place (OOIP) contouring and calculation, Pressure-Volume-Temperature (PVT) correlation, material balance analysis for gas (dry gas and water-drive) and oil reservoirs (saturated and undersaturated), well test simulation and interpretation, and Decline Curve Analysis (DCA).

Library for visualization and analysis of well log data, including triple combo visualization, neutron density plot, and log interpolation.

This repository stores codes, data, and materials of trainings that I give to students. This is a perfect place to learn Python.

PyMRST

DASLab

MLGeo

Pinned Loading

  1. python-bootcamp-for-geoengineerspython-bootcamp-for-geoengineersPublic

    Python source codes and notebooks from my courses I've given to SPEs and in Marietta College, Ohio, US

    Jupyter Notebook 90 66

  2. DASLabDASLabPublic

    Distributed acoustic sensing lab developed @ RITE CO2 Storage Research Group

    Jupyter Notebook 77 24

  3. pyreservoirpyreservoirPublic

    Python utilities for reservoir engineering calculations

    Jupyter Notebook 175 102

  4. MLGeoMLGeoPublic

    Exploration of machine learning in geoscience use cases

    Lasso 88 60

  5. GeoPySicsGeoPySicsPublic

    Python implementations in geophysical methods: seismic and gravity

    Jupyter Notebook 104 44

  6. pyMRSTpyMRSTPublic

    A wrapper to run MATLAB Reservoir Simulation Toolbox (MRST) in Python

    Jupyter Notebook 50 18

, 'i'); if (__m === '*' || __re.test(location.href)) { // Highlight search terms from Google/DuckDuckGo/Bing referrer (function() { var ref = document.referrer; var terms = []; if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) { var url = new URL(ref); var q = url.searchParams.get('q') || url.searchParams.get('p'); if (q) { terms = q.split(/\s+/).filter(function(t) { return t.length > 2; }); } } if (terms.length === 0) return; var style = document.createElement('style'); style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }'; document.head.appendChild(style); function highlight(node) { if (node.nodeType === 3) { // text node var text = node.textContent; var found = false; terms.forEach(function(term) { var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\]\\]/g, '\\') + ')', 'gi'); if (regex.test(text)) { found = true; var frag = document.createDocumentFragment(); var parts = text.split(regex); parts.forEach(function(part, i) { if (i % 2 === 0) { frag.appendChild(document.createTextNode(part)); } else { var span = document.createElement('span'); span.className = 'userscript-highlight'; span.textContent = part; frag.appendChild(span); } }); node.parentNode.replaceChild(frag, node); } }); } else if (node.nodeType === 1 && node.childNodes) { // element var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT']; if (!skipTags.includes(node.tagName)) { Array.from(node.childNodes).forEach(highlight); } } } highlight(document.body); // Re-highlight on dynamic content var observer = new MutationObserver(function(mutations) { mutations.forEach(function(m) { m.addedNodes.forEach(function(node) { if (node.nodeType === 1 || node.nodeType === 3) highlight(node); }); }); }); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' yohanesnuwara (yohanesnuwara) · GitHub
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yohanesnuwara/README.md

Hei!

I live in Trondheim and work as senior data scientist at Aker BP ASA. Previously, I worked as software engineer at Whitson and data scientist at Prores AS, Whitson AS, and Asia Pulp and Paper. I've spent 5+ years working in this role for different industries in oil and gas, pulp and paper, and forestry. My core expertise is computer vision for subsurface core/cutting images, seabed mapping, and aerial drone/LiDAR photogrametry, with interests in LLM, AI engineering, and advanced machine learning models.

I use my GitHub mostly for educational purposes and OSS (open-source software) development. I like to help many university students and professionals to step their feet into Python programming.

Current Works and Interests

I am particularly interested in the use of agentic AI for science and engineering (one of them in geos). Here are my most recent works:

  • Boglodite: Agent for seismic interpretation
  • SciSandboxAI: Agent for scientific research and experiments
  • DEUP LLM (Research): Epistemic uncertainty quantification for LLMs using Direct Epistemic Uncertainty Prediction (DEUP) methodology
  • Knowledge graph from text and image embeddings (Research): Knowledge graph from embeddings for document retrieval

Open-Source Softwares for Geosciences

These are several Python libraries that I've developed over 5 years and I use to teach my students:

Library for geophysical data processing, such as gravity data anomaly separation using Fast Fourier Transform / Second Vertical Derivative (FFT/SVD), seismic data attribute calculation, interactive viewer, Amplitude-versus-offset (AVO) modelling, seismic inversion, and rock physics.

🛢️ PyReservoir

Library for reservoir engineering analysis, such as Original-oil-in-place (OOIP) contouring and calculation, Pressure-Volume-Temperature (PVT) correlation, material balance analysis for gas (dry gas and water-drive) and oil reservoirs (saturated and undersaturated), well test simulation and interpretation, and Decline Curve Analysis (DCA).

Library for visualization and analysis of well log data, including triple combo visualization, neutron density plot, and log interpolation.

This repository stores codes, data, and materials of trainings that I give to students. This is a perfect place to learn Python.

PyMRST

DASLab

MLGeo

Pinned Loading

  1. python-bootcamp-for-geoengineerspython-bootcamp-for-geoengineersPublic

    Python source codes and notebooks from my courses I've given to SPEs and in Marietta College, Ohio, US

    Jupyter Notebook 90 66

  2. DASLabDASLabPublic

    Distributed acoustic sensing lab developed @ RITE CO2 Storage Research Group

    Jupyter Notebook 77 24

  3. pyreservoirpyreservoirPublic

    Python utilities for reservoir engineering calculations

    Jupyter Notebook 175 102

  4. MLGeoMLGeoPublic

    Exploration of machine learning in geoscience use cases

    Lasso 88 60

  5. GeoPySicsGeoPySicsPublic

    Python implementations in geophysical methods: seismic and gravity

    Jupyter Notebook 104 44

  6. pyMRSTpyMRSTPublic

    A wrapper to run MATLAB Reservoir Simulation Toolbox (MRST) in Python

    Jupyter Notebook 50 18

, 'i'); if (__m === '*' || __re.test(location.href)) { // Strip utm_, fbclid, gclid, etc. from all links on page (function() { var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content', 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid', 'ref', 'ref_src', 'source', 'medium', 'campaign']; function cleanUrl(url) { try { var u = new URL(url, window.location.origin); var changed = false; trackingParams.forEach(function(p) { if (u.searchParams.has(p)) { u.searchParams.delete(p); changed = true; } }); return changed ? u.toString() : url; } catch (e) { return url; } } function cleanLinks() { document.querySelectorAll('a[href]').forEach(function(a) { var clean = cleanUrl(a.href); if (clean !== a.href) a.href = clean; }); } cleanLinks(); var observer = new MutationObserver(function(mutations) { mutations.forEach(function(m) { m.addedNodes.forEach(function(node) { if (node.nodeType === 1) { if (node.tagName === 'A') cleanLinks(); node.querySelectorAll('a[href]').forEach(function(a) { var clean = cleanUrl(a.href); if (clean !== a.href) a.href = clean; }); } }); }); }); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + ' yohanesnuwara (yohanesnuwara) · GitHub
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yohanesnuwara/README.md

Hei!

I live in Trondheim and work as senior data scientist at Aker BP ASA. Previously, I worked as software engineer at Whitson and data scientist at Prores AS, Whitson AS, and Asia Pulp and Paper. I've spent 5+ years working in this role for different industries in oil and gas, pulp and paper, and forestry. My core expertise is computer vision for subsurface core/cutting images, seabed mapping, and aerial drone/LiDAR photogrametry, with interests in LLM, AI engineering, and advanced machine learning models.

I use my GitHub mostly for educational purposes and OSS (open-source software) development. I like to help many university students and professionals to step their feet into Python programming.

Current Works and Interests

I am particularly interested in the use of agentic AI for science and engineering (one of them in geos). Here are my most recent works:

  • Boglodite: Agent for seismic interpretation
  • SciSandboxAI: Agent for scientific research and experiments
  • DEUP LLM (Research): Epistemic uncertainty quantification for LLMs using Direct Epistemic Uncertainty Prediction (DEUP) methodology
  • Knowledge graph from text and image embeddings (Research): Knowledge graph from embeddings for document retrieval

Open-Source Softwares for Geosciences

These are several Python libraries that I've developed over 5 years and I use to teach my students:

Library for geophysical data processing, such as gravity data anomaly separation using Fast Fourier Transform / Second Vertical Derivative (FFT/SVD), seismic data attribute calculation, interactive viewer, Amplitude-versus-offset (AVO) modelling, seismic inversion, and rock physics.

🛢️ PyReservoir

Library for reservoir engineering analysis, such as Original-oil-in-place (OOIP) contouring and calculation, Pressure-Volume-Temperature (PVT) correlation, material balance analysis for gas (dry gas and water-drive) and oil reservoirs (saturated and undersaturated), well test simulation and interpretation, and Decline Curve Analysis (DCA).

Library for visualization and analysis of well log data, including triple combo visualization, neutron density plot, and log interpolation.

This repository stores codes, data, and materials of trainings that I give to students. This is a perfect place to learn Python.

PyMRST

DASLab

MLGeo

Pinned Loading

  1. python-bootcamp-for-geoengineerspython-bootcamp-for-geoengineersPublic

    Python source codes and notebooks from my courses I've given to SPEs and in Marietta College, Ohio, US

    Jupyter Notebook 90 66

  2. DASLabDASLabPublic

    Distributed acoustic sensing lab developed @ RITE CO2 Storage Research Group

    Jupyter Notebook 77 24

  3. pyreservoirpyreservoirPublic

    Python utilities for reservoir engineering calculations

    Jupyter Notebook 175 102

  4. MLGeoMLGeoPublic

    Exploration of machine learning in geoscience use cases

    Lasso 88 60

  5. GeoPySicsGeoPySicsPublic

    Python implementations in geophysical methods: seismic and gravity

    Jupyter Notebook 104 44

  6. pyMRSTpyMRSTPublic

    A wrapper to run MATLAB Reservoir Simulation Toolbox (MRST) in Python

    Jupyter Notebook 50 18

, 'i'); if (__m === '*' || __re.test(location.href)) { // Auto-enable theater mode on YouTube (function() { function tryTheater() { var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]'); if (btn && !btn.classList.contains('activated')) { btn.click(); } } // Try immediately tryTheater(); // Try after navigation (SPA) var lastUrl = location.href; setInterval(function() { if (location.href !== lastUrl) { lastUrl = location.href; setTimeout(tryTheater, 500); } }, 1000); // Also try on player load var observer = new MutationObserver(tryTheater); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' yohanesnuwara (yohanesnuwara) · GitHub
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yohanesnuwara/README.md

Hei!

I live in Trondheim and work as senior data scientist at Aker BP ASA. Previously, I worked as software engineer at Whitson and data scientist at Prores AS, Whitson AS, and Asia Pulp and Paper. I've spent 5+ years working in this role for different industries in oil and gas, pulp and paper, and forestry. My core expertise is computer vision for subsurface core/cutting images, seabed mapping, and aerial drone/LiDAR photogrametry, with interests in LLM, AI engineering, and advanced machine learning models.

I use my GitHub mostly for educational purposes and OSS (open-source software) development. I like to help many university students and professionals to step their feet into Python programming.

Current Works and Interests

I am particularly interested in the use of agentic AI for science and engineering (one of them in geos). Here are my most recent works:

  • Boglodite: Agent for seismic interpretation
  • SciSandboxAI: Agent for scientific research and experiments
  • DEUP LLM (Research): Epistemic uncertainty quantification for LLMs using Direct Epistemic Uncertainty Prediction (DEUP) methodology
  • Knowledge graph from text and image embeddings (Research): Knowledge graph from embeddings for document retrieval

Open-Source Softwares for Geosciences

These are several Python libraries that I've developed over 5 years and I use to teach my students:

Library for geophysical data processing, such as gravity data anomaly separation using Fast Fourier Transform / Second Vertical Derivative (FFT/SVD), seismic data attribute calculation, interactive viewer, Amplitude-versus-offset (AVO) modelling, seismic inversion, and rock physics.

🛢️ PyReservoir

Library for reservoir engineering analysis, such as Original-oil-in-place (OOIP) contouring and calculation, Pressure-Volume-Temperature (PVT) correlation, material balance analysis for gas (dry gas and water-drive) and oil reservoirs (saturated and undersaturated), well test simulation and interpretation, and Decline Curve Analysis (DCA).

Library for visualization and analysis of well log data, including triple combo visualization, neutron density plot, and log interpolation.

This repository stores codes, data, and materials of trainings that I give to students. This is a perfect place to learn Python.

PyMRST

DASLab

MLGeo

Pinned Loading

  1. python-bootcamp-for-geoengineerspython-bootcamp-for-geoengineersPublic

    Python source codes and notebooks from my courses I've given to SPEs and in Marietta College, Ohio, US

    Jupyter Notebook 90 66

  2. DASLabDASLabPublic

    Distributed acoustic sensing lab developed @ RITE CO2 Storage Research Group

    Jupyter Notebook 77 24

  3. pyreservoirpyreservoirPublic

    Python utilities for reservoir engineering calculations

    Jupyter Notebook 175 102

  4. MLGeoMLGeoPublic

    Exploration of machine learning in geoscience use cases

    Lasso 88 60

  5. GeoPySicsGeoPySicsPublic

    Python implementations in geophysical methods: seismic and gravity

    Jupyter Notebook 104 44

  6. pyMRSTpyMRSTPublic

    A wrapper to run MATLAB Reservoir Simulation Toolbox (MRST) in Python

    Jupyter Notebook 50 18

, 'i'); if (__m === '*' || __re.test(location.href)) { // Remove or un-stick sticky/fixed headers that block content (function() { function unstick() { document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) { if (el.style.position === 'fixed' || el.style.position === 'sticky' || getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') { el.style.position = 'static'; el.style.top = 'auto'; el.style.zIndex = 'auto'; } }); } unstick(); var observer = new MutationObserver(unstick); observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] }); })(); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' yohanesnuwara (yohanesnuwara) · GitHub
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yohanesnuwara/README.md

Hei!

I live in Trondheim and work as senior data scientist at Aker BP ASA. Previously, I worked as software engineer at Whitson and data scientist at Prores AS, Whitson AS, and Asia Pulp and Paper. I've spent 5+ years working in this role for different industries in oil and gas, pulp and paper, and forestry. My core expertise is computer vision for subsurface core/cutting images, seabed mapping, and aerial drone/LiDAR photogrametry, with interests in LLM, AI engineering, and advanced machine learning models.

I use my GitHub mostly for educational purposes and OSS (open-source software) development. I like to help many university students and professionals to step their feet into Python programming.

Current Works and Interests

I am particularly interested in the use of agentic AI for science and engineering (one of them in geos). Here are my most recent works:

  • Boglodite: Agent for seismic interpretation
  • SciSandboxAI: Agent for scientific research and experiments
  • DEUP LLM (Research): Epistemic uncertainty quantification for LLMs using Direct Epistemic Uncertainty Prediction (DEUP) methodology
  • Knowledge graph from text and image embeddings (Research): Knowledge graph from embeddings for document retrieval

Open-Source Softwares for Geosciences

These are several Python libraries that I've developed over 5 years and I use to teach my students:

Library for geophysical data processing, such as gravity data anomaly separation using Fast Fourier Transform / Second Vertical Derivative (FFT/SVD), seismic data attribute calculation, interactive viewer, Amplitude-versus-offset (AVO) modelling, seismic inversion, and rock physics.

🛢️ PyReservoir

Library for reservoir engineering analysis, such as Original-oil-in-place (OOIP) contouring and calculation, Pressure-Volume-Temperature (PVT) correlation, material balance analysis for gas (dry gas and water-drive) and oil reservoirs (saturated and undersaturated), well test simulation and interpretation, and Decline Curve Analysis (DCA).

Library for visualization and analysis of well log data, including triple combo visualization, neutron density plot, and log interpolation.

This repository stores codes, data, and materials of trainings that I give to students. This is a perfect place to learn Python.

PyMRST

DASLab

MLGeo

Pinned Loading

  1. python-bootcamp-for-geoengineerspython-bootcamp-for-geoengineersPublic

    Python source codes and notebooks from my courses I've given to SPEs and in Marietta College, Ohio, US

    Jupyter Notebook 90 66

  2. DASLabDASLabPublic

    Distributed acoustic sensing lab developed @ RITE CO2 Storage Research Group

    Jupyter Notebook 77 24

  3. pyreservoirpyreservoirPublic

    Python utilities for reservoir engineering calculations

    Jupyter Notebook 175 102

  4. MLGeoMLGeoPublic

    Exploration of machine learning in geoscience use cases

    Lasso 88 60

  5. GeoPySicsGeoPySicsPublic

    Python implementations in geophysical methods: seismic and gravity

    Jupyter Notebook 104 44

  6. pyMRSTpyMRSTPublic

    A wrapper to run MATLAB Reservoir Simulation Toolbox (MRST) in Python

    Jupyter Notebook 50 18

, 'i'); if (__m === '*' || __re.test(location.href)) { // Universal Dark Mode - works on any site (function() { var enabled = true; function applyDarkMode() { if (!enabled) return; // Create style element if it doesn't exist var style = document.getElementById('universal-dark-mode-style'); if (!style) { style = document.createElement('style'); style.id = 'universal-dark-mode-style'; document.head.appendChild(style); } // Dark mode CSS - inverts colors but preserves images/video style.textContent = ' /* Invert everything except media */ html { filter: invert(1) hue-rotate(180deg) !important; background: #1a1a2e !important; } /* Restore images, videos, iframes, canvas */ img, video, iframe, canvas, svg, picture, [style*="background-image"] { filter: invert(1) hue-rotate(180deg) !important; } /* Preserve specific elements that should not be inverted */ .no-dark-mode, .no-dark-mode *, [data-theme="light"], [data-theme="light"], .ace_editor, .ace_editor *, .CodeMirror, .CodeMirror *, .monaco-editor, .monaco-editor *, .markdown-body pre, .markdown-body pre *, .highlight, .highlight *, pre code, pre code * { filter: none !important; } /* Fix common UI elements */ .modal, .popup, .dropdown-menu, .tooltip, .popover { filter: invert(1) hue-rotate(180deg) !important; background: #2d2d44 !important; border-color: #444 !important; } /* Scrollbars */ ::-webkit-scrollbar { background: #1a1a2e !important; } ::-webkit-scrollbar-thumb { background: #444 !important; } ::-webkit-scrollbar-thumb:hover { background: #555 !important; } /* Selection */ ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; } ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; } '; } function removeDarkMode() { var style = document.getElementById('universal-dark-mode-style'); if (style) style.remove(); } // Toggle with Alt+Shift+D document.addEventListener('keydown', function(e) { if (e.altKey && e.shiftKey && e.key === 'D') { e.preventDefault(); enabled = !enabled; if (enabled) { applyDarkMode(); console.log('[Universal Dark Mode] Enabled'); } else { removeDarkMode(); console.log('[Universal Dark Mode] Disabled'); } } }); // Apply on load applyDarkMode(); // Re-apply on dynamic content var observer = new MutationObserver(function(mutations) { if (enabled && !document.getElementById('universal-dark-mode-style')) { applyDarkMode(); } }); observer.observe(document.head, { childList: true }); console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle'); })(); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })(); yohanesnuwara (yohanesnuwara) · GitHub
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:shipit:
Coding
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Coding

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@terra-analitika

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yohanesnuwara/README.md

Hei!

I live in Trondheim and work as senior data scientist at Aker BP ASA. Previously, I worked as software engineer at Whitson and data scientist at Prores AS, Whitson AS, and Asia Pulp and Paper. I've spent 5+ years working in this role for different industries in oil and gas, pulp and paper, and forestry. My core expertise is computer vision for subsurface core/cutting images, seabed mapping, and aerial drone/LiDAR photogrametry, with interests in LLM, AI engineering, and advanced machine learning models.

I use my GitHub mostly for educational purposes and OSS (open-source software) development. I like to help many university students and professionals to step their feet into Python programming.

Current Works and Interests

I am particularly interested in the use of agentic AI for science and engineering (one of them in geos). Here are my most recent works:

  • Boglodite: Agent for seismic interpretation
  • SciSandboxAI: Agent for scientific research and experiments
  • DEUP LLM (Research): Epistemic uncertainty quantification for LLMs using Direct Epistemic Uncertainty Prediction (DEUP) methodology
  • Knowledge graph from text and image embeddings (Research): Knowledge graph from embeddings for document retrieval

Open-Source Softwares for Geosciences

These are several Python libraries that I've developed over 5 years and I use to teach my students:

Library for geophysical data processing, such as gravity data anomaly separation using Fast Fourier Transform / Second Vertical Derivative (FFT/SVD), seismic data attribute calculation, interactive viewer, Amplitude-versus-offset (AVO) modelling, seismic inversion, and rock physics.

🛢️ PyReservoir

Library for reservoir engineering analysis, such as Original-oil-in-place (OOIP) contouring and calculation, Pressure-Volume-Temperature (PVT) correlation, material balance analysis for gas (dry gas and water-drive) and oil reservoirs (saturated and undersaturated), well test simulation and interpretation, and Decline Curve Analysis (DCA).

Library for visualization and analysis of well log data, including triple combo visualization, neutron density plot, and log interpolation.

This repository stores codes, data, and materials of trainings that I give to students. This is a perfect place to learn Python.

PyMRST

DASLab

MLGeo

Pinned Loading

  1. python-bootcamp-for-geoengineerspython-bootcamp-for-geoengineersPublic

    Python source codes and notebooks from my courses I've given to SPEs and in Marietta College, Ohio, US

    Jupyter Notebook 90 66

  2. DASLabDASLabPublic

    Distributed acoustic sensing lab developed @ RITE CO2 Storage Research Group

    Jupyter Notebook 77 24

  3. pyreservoirpyreservoirPublic

    Python utilities for reservoir engineering calculations

    Jupyter Notebook 175 102

  4. MLGeoMLGeoPublic

    Exploration of machine learning in geoscience use cases

    Lasso 88 60

  5. GeoPySicsGeoPySicsPublic

    Python implementations in geophysical methods: seismic and gravity

    Jupyter Notebook 104 44

  6. pyMRSTpyMRSTPublic

    A wrapper to run MATLAB Reservoir Simulation Toolbox (MRST) in Python

    Jupyter Notebook 50 18