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  • Cornell University
  • Ithaca, NY

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yuqingc7/README.md

Hi there 👋

I am Yuqing "Iris" Chen (she/her).

I'm a Ph.D. candidate at Cornell University.

  • 🧬 I apply statistical and machine learning methods to genomic sequencing data to address biological questions in evolutionary genomics and cancer diagnostics.
  • 👩🏻‍💻 My toolkit includes bioinformatics, genomics, NGS data analysis, machine learning, statistical modeling, simulations, and scientific computing.
  • 💻 I enjoy applying computational methods that transform NGS data into actionable insights, from statistical genomics to DNA foundation-model–based deep learning.

Research interests: population & statistical genomics, machine learning for genomics, admixture & introgression, adaptation, genetic load

Pinned Loading

  1. NYC-oyster-admixture NYC-oyster-admixture Public

    This repository contains scripts for NYC oyster admixture project

    R 1

  2. CT-oyster-recruitment CT-oyster-recruitment Public

    Code repo for manuscript "Genomic evidence for widespread aquaculture contributions to recruitment in estuarine shellfish populations"

    F*

  3. CT-oyster-temporal CT-oyster-temporal Public

  4. oyster-genetic-load oyster-genetic-load Public

    Shell

  5. spisula-solidis spisula-solidis Public

    Scripts repo for Atlantic surf clams (Spisula solidissima solidissima) manuscript

    HTML

  6. unphased-LAI unphased-LAI Public

    Simulation & analyses code repo for BTRY 6840 course project "Local ancestry inference (LAI) for unphased diploid data: starting from genotypes or mapped sequence reads?"

    Roff