Update release.rst#1621

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Merged
joshmoore merged 17 commits into from
Feb 14, 2024
Merged

Update release.rst #1621

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f50296c
Update release.rst
sanketverma1704 Dec 27, 2023
3df1849
Merge branch 'main' into update_release_notes
d-v-b Jan 9, 2024
aaf5a30
Update release.rst
sanketverma1704 Jan 23, 2024
d069205
Merge branch 'main' into update_release_notes
sanketverma1704 Jan 23, 2024
e28e1c9
Change 2.16.2 → 2.17.0
sanketverma1704 Jan 29, 2024
6a70b30
Update moto for test_s3
joshmoore Feb 5, 2024
6ff474e
Skip bsddb3 tests to prevent warning failure
joshmoore Feb 5, 2024
37e6e1f
Fix more user warning tests
joshmoore Feb 5, 2024
4f7b7b2
Fix even more user warning tests
joshmoore Feb 5, 2024
bfa1db4
Skip coverage for importorskips
joshmoore Feb 5, 2024
827545d
Merge branch 'main' into update_release_notes
joshmoore Feb 14, 2024
195b447
Move to have_X skip method for deps
joshmoore Feb 14, 2024
3092f42
Update release.rst (PR#1663)
sanketverma1704 Feb 14, 2024
1e756c6
Fix test_core.py 'compile' issues
joshmoore Feb 14, 2024
af91f8d
Add black formatting
joshmoore Feb 14, 2024
f375f95
Drop Windows/3.9 build due to unrelated failures
joshmoore Feb 14, 2024
06f903d
fix typo
joshmoore Feb 14, 2024
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2 changes: 1 addition & 1 deletion .github/workflows/windows-testing.yml
View file
Open in desktop
Original file line numberDiff line numberDiff line change
Expand Up@@ -16,7 +16,7 @@ jobs:
strategy:
fail-fast: True
matrix:
python-version: ['3.9', '3.10', '3.11']
python-version: ['3.10', '3.11']
steps:
- uses: actions/checkout@v4
with:
Expand Down
40 changes: 40 additions & 0 deletions docs/release.rst
View file
Open in desktop
Original file line numberDiff line numberDiff line change
Expand Up@@ -18,12 +18,20 @@ Release notes
Unreleased
----------

.. _release_2.17.0:

2.17.0
------

Enhancements
~~~~~~~~~~~~

* Added type hints to ``zarr.creation.create()``.
By :user:`David Stansby <dstansby>` :issue:`1536`.

* Pyodide support: Don't require fasteners on Emscripten.
By :user:`Hood Chatham <hoodmane>` :issue:`1663`.

Docs
~~~~

Expand All@@ -45,9 +53,21 @@ Docs
* Minor tweak to advanced indexing tutorial examples.
By :user:`Ross Barnowski <rossbar>` :issue:`1550`.

* Automatically document array members using sphinx-automodapi.
By :user:`David Stansby <dstansby>` :issue:`1547`.

* Add a markdown file documenting the current and former core-developer team.
By :user:`Joe Hamman <jhamman>` :issue:`1628`.

* Add Norman Rzepka to core-dev team.
By :user:`Joe Hamman <jhamman>` :issue:`1630`.

* Added section about accessing zip files that are on s3.
By :user:`Jeff Peck <jeffpeck10x>` :issue:`1613`.

* Add V3 roadmap and design document.
By :user:`Joe Hamman <jhamman>` :issue:`1583`.

Maintenance
~~~~~~~~~~~

Expand DownExpand Up@@ -75,6 +95,26 @@ Maintenance
* Remove ``sphinx-rtd-theme`` dependency from ``pyproject.toml``.
By :user:`Sanket Verma <MSanKeys963>` :issue:`1563`.

* Remove ``CODE_OF_CONDUCT.md`` file from the Zarr-Python repository.
By :user:`Sanket Verma <MSanKeys963>` :issue:`1572`.

* Bump version of black in pre-commit.
By :user:`David Stansby <dtstansby>` :issue:`1559`.

* Use list comprehension where applicable.
By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1555`.

* Use format specification mini-language to format string.
By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1558`.

* Single startswith() call instead of multiple ones.
By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1556`.

* Move codespell options around.
By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1196`.

* Remove unused mypy ignore comments.
By :user:`David Stansby <dtstansby>` :issue:`1602`.

.. _release_2.16.1:

Expand Down
2 changes: 1 addition & 1 deletion requirements_dev_optional.txt
View file
Open in desktop
Original file line numberDiff line numberDiff line change
Expand Up@@ -20,4 +20,4 @@ pytest-timeout==2.2.0
h5py==3.10.0
fsspec==2023.12.2
s3fs==2023.12.2
moto[server]>=4.0.8
moto[server]>=5.0.1
28 changes: 20 additions & 8 deletions zarr/tests/test_core.py
View file
Open in desktop
Original file line numberDiff line numberDiff line change
Expand Up@@ -73,7 +73,15 @@
)
from zarr.tests.test_storage_v3 import DummyStorageTransfomer
from zarr.util import buffer_size
from zarr.tests.util import abs_container, skip_test_env_var, have_fsspec, mktemp
from zarr.tests.util import (
abs_container,
have_bsddb3,
have_fsspec,
have_lmdb,
have_sqlite3,
mktemp,
skip_test_env_var,
)
from zarr.types import DIMENSION_SEPARATOR

# noinspection PyMethodMayBeStatic
Expand DownExpand Up@@ -2038,9 +2046,11 @@ def test_nbytes_stored(self):
pass # not implemented


@pytest.mark.skipif(have_bsddb3 is False, reason="needs bsddb3")
class TestArrayWithDBMStoreBerkeleyDB(TestArray):
def create_store(self):
bsddb3 = pytest.importorskip("bsddb3")
import bsddb3

path = mktemp(suffix=".dbm")
atexit.register(os.remove, path)
store = DBMStore(path, flag="n", open=bsddb3.btopen)
Expand All@@ -2050,9 +2060,9 @@ def test_nbytes_stored(self):
pass # not implemented


@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStore(TestArray):
def create_store(self):
pytest.importorskip("lmdb")
path = mktemp(suffix=".lmdb")
atexit.register(atexit_rmtree, path)
store = LMDBStore(path, buffers=True)
Expand All@@ -2065,9 +2075,9 @@ def test_nbytes_stored(self):
pass # not implemented


@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStoreNoBuffers(TestArray):
def create_store(self):
pytest.importorskip("lmdb")
path = mktemp(suffix=".lmdb")
atexit.register(atexit_rmtree, path)
store = LMDBStore(path, buffers=False)
Expand All@@ -2077,9 +2087,9 @@ def test_nbytes_stored(self):
pass # not implemented


@pytest.mark.skipif(have_sqlite3 is False, reason="needs sqlite3")
class TestArrayWithSQLiteStore(TestArray):
def create_store(self):
pytest.importorskip("sqlite3")
path = mktemp(suffix=".db")
atexit.register(atexit_rmtree, path)
store = SQLiteStore(path)
Expand DownExpand Up@@ -2758,9 +2768,11 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_bsddb3 is False, reason="needs bsddb3")
class TestArrayWithDBMStoreV3BerkeleyDB(TestArrayV3):
def create_store(self) -> DBMStoreV3:
bsddb3 = pytest.importorskip("bsddb3")
import bsddb3

path = mktemp(suffix=".dbm")
atexit.register(os.remove, path)
store = DBMStoreV3(path, flag="n", open=bsddb3.btopen)
Expand All@@ -2771,11 +2783,11 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStoreV3(TestArrayV3):
lmdb_buffers = True

def create_store(self) -> LMDBStoreV3:
pytest.importorskip("lmdb")
path = mktemp(suffix=".lmdb")
atexit.register(atexit_rmtree, path)
store = LMDBStoreV3(path, buffers=self.lmdb_buffers)
Expand All@@ -2797,9 +2809,9 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_sqlite3 is False, reason="needs sqlite3")
class TestArrayWithSQLiteStoreV3(TestArrayV3):
def create_store(self):
pytest.importorskip("sqlite3")
path = mktemp(suffix=".db")
atexit.register(atexit_rmtree, path)
store = SQLiteStoreV3(path)
Expand Down
2 changes: 1 addition & 1 deletion zarr/tests/test_storage.py
View file
Open in desktop
Original file line numberDiff line numberDiff line change
Expand Up@@ -1396,7 +1396,7 @@ def s3(request):
port = 5555
endpoint_uri = "http://127.0.0.1:%d/" % port
proc = subprocess.Popen(
shlex.split("moto_server s3 -p %d" % port),
shlex.split("moto_server -p %d" % port),
stderr=subprocess.DEVNULL,
stdout=subprocess.DEVNULL,
)
Expand Down
24 changes: 24 additions & 0 deletions zarr/tests/util.py
View file
Open in desktop
Original file line numberDiff line numberDiff line change
Expand Up@@ -69,6 +69,30 @@ def skip_test_env_var(name):
have_fsspec = False


try:
import bsddb3 # noqa: F401

have_bsddb3 = True
except ImportError: # pragma: no cover
have_bsddb3 = False


try:
import lmdb # noqa: F401

have_lmdb = True
except ImportError: # pragma: no cover
have_lmdb = False


try:
import sqlite3 # noqa: F401

have_sqlite3 = True
except ImportError: # pragma: no cover
have_sqlite3 = False


def abs_container():
from azure.core.exceptions import ResourceExistsError
import azure.storage.blob as asb
Expand Down
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

Skip to content
Update release.rst#1621

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to your account

 Merged

joshmoore
merged 17 commits into

from

Feb 14, 2024
 Merged


Update release.rst
#1621
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f50296c

Update release.rst


sanketverma1704 Dec 27, 2023
3df1849

Merge branch 'main' into update_release_notes


d-v-b Jan 9, 2024
aaf5a30

Update release.rst


sanketverma1704 Jan 23, 2024
d069205

Merge branch 'main' into update_release_notes


sanketverma1704 Jan 23, 2024
e28e1c9

Change 2.16.2 → 2.17.0


sanketverma1704 Jan 29, 2024
6a70b30

Update moto for test_s3


joshmoore Feb 5, 2024
6ff474e

Skip bsddb3 tests to prevent warning failure


joshmoore Feb 5, 2024
37e6e1f

Fix more user warning tests


joshmoore Feb 5, 2024
4f7b7b2

Fix even more user warning tests


joshmoore Feb 5, 2024
bfa1db4

Skip coverage for importorskips


joshmoore Feb 5, 2024
827545d

Merge branch 'main' into update_release_notes


joshmoore Feb 14, 2024
195b447

Move to have_X skip method for deps


joshmoore Feb 14, 2024
3092f42

Update release.rst (PR#1663)


sanketverma1704 Feb 14, 2024
1e756c6

Fix test_core.py 'compile' issues


joshmoore Feb 14, 2024
af91f8d

Add black formatting


joshmoore Feb 14, 2024
f375f95

Drop Windows/3.9 build due to unrelated failures


joshmoore Feb 14, 2024
06f903d

fix typo


joshmoore Feb 14, 2024

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2 changes: 1 addition & 1 deletion
.github/workflows/windows-testing.yml

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -16,7 +16,7 @@ jobs:
 strategy:
 fail-fast: True
 matrix:
 python-version: ['3.9', '3.10', '3.11']
 python-version: ['3.10', '3.11']
 steps:
 - uses: actions/checkout@v4
 with:
Expand Down

40 changes: 40 additions & 0 deletions
docs/release.rst

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -18,12 +18,20 @@ Release notes
Unreleased
----------

.. _release_2.17.0:

2.17.0
------

Enhancements
~~~~~~~~~~~~

* Added type hints to ``zarr.creation.create()``.
 By :user:`David Stansby <dstansby>` :issue:`1536`.

* Pyodide support: Don't require fasteners on Emscripten.
 By :user:`Hood Chatham <hoodmane>` :issue:`1663`.

Docs
~~~~

Expand All@@ -45,9 +53,21 @@ Docs
* Minor tweak to advanced indexing tutorial examples.
 By :user:`Ross Barnowski <rossbar>` :issue:`1550`.

* Automatically document array members using sphinx-automodapi.
 By :user:`David Stansby <dstansby>` :issue:`1547`.

* Add a markdown file documenting the current and former core-developer team.
 By :user:`Joe Hamman <jhamman>` :issue:`1628`.

* Add Norman Rzepka to core-dev team.
 By :user:`Joe Hamman <jhamman>` :issue:`1630`.

* Added section about accessing zip files that are on s3.
 By :user:`Jeff Peck <jeffpeck10x>` :issue:`1613`.

* Add V3 roadmap and design document.
 By :user:`Joe Hamman <jhamman>` :issue:`1583`.

Maintenance
~~~~~~~~~~~

Expand DownExpand Up@@ -75,6 +95,26 @@ Maintenance
* Remove ``sphinx-rtd-theme`` dependency from ``pyproject.toml``.
 By :user:`Sanket Verma <MSanKeys963>` :issue:`1563`.

* Remove ``CODE_OF_CONDUCT.md`` file from the Zarr-Python repository.
 By :user:`Sanket Verma <MSanKeys963>` :issue:`1572`.

* Bump version of black in pre-commit.
 By :user:`David Stansby <dtstansby>` :issue:`1559`.

* Use list comprehension where applicable.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1555`.

* Use format specification mini-language to format string.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1558`.

* Single startswith() call instead of multiple ones.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1556`.

* Move codespell options around.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1196`.

* Remove unused mypy ignore comments.
 By :user:`David Stansby <dtstansby>` :issue:`1602`.

.. _release_2.16.1:

Expand Down

2 changes: 1 addition & 1 deletion
requirements_dev_optional.txt

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -20,4 +20,4 @@ pytest-timeout==2.2.0
h5py==3.10.0
fsspec==2023.12.2
s3fs==2023.12.2
moto[server]>=4.0.8
moto[server]>=5.0.1

28 changes: 20 additions & 8 deletions
zarr/tests/test_core.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -73,7 +73,15 @@
)
from zarr.tests.test_storage_v3 import DummyStorageTransfomer
from zarr.util import buffer_size
from zarr.tests.util import abs_container, skip_test_env_var, have_fsspec, mktemp
from zarr.tests.util import (
 abs_container,
 have_bsddb3,
 have_fsspec,
 have_lmdb,
 have_sqlite3,
 mktemp,
 skip_test_env_var,
)
from zarr.types import DIMENSION_SEPARATOR

# noinspection PyMethodMayBeStatic
Expand DownExpand Up@@ -2038,9 +2046,11 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_bsddb3 is False, reason="needs bsddb3")
class TestArrayWithDBMStoreBerkeleyDB(TestArray):
 def create_store(self):
 bsddb3 = pytest.importorskip("bsddb3")
 import bsddb3

 path = mktemp(suffix=".dbm")
 atexit.register(os.remove, path)
 store = DBMStore(path, flag="n", open=bsddb3.btopen)
Expand All@@ -2050,9 +2060,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStore(TestArray):
 def create_store(self):
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStore(path, buffers=True)
Expand All@@ -2065,9 +2075,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStoreNoBuffers(TestArray):
 def create_store(self):
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStore(path, buffers=False)
Expand All@@ -2077,9 +2087,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_sqlite3 is False, reason="needs sqlite3")
class TestArrayWithSQLiteStore(TestArray):
 def create_store(self):
 pytest.importorskip("sqlite3")
 path = mktemp(suffix=".db")
 atexit.register(atexit_rmtree, path)
 store = SQLiteStore(path)
Expand DownExpand Up@@ -2758,9 +2768,11 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_bsddb3 is False, reason="needs bsddb3")
class TestArrayWithDBMStoreV3BerkeleyDB(TestArrayV3):
 def create_store(self) -> DBMStoreV3:
 bsddb3 = pytest.importorskip("bsddb3")
 import bsddb3

 path = mktemp(suffix=".dbm")
 atexit.register(os.remove, path)
 store = DBMStoreV3(path, flag="n", open=bsddb3.btopen)
Expand All@@ -2771,11 +2783,11 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStoreV3(TestArrayV3):
 lmdb_buffers = True

 def create_store(self) -> LMDBStoreV3:
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStoreV3(path, buffers=self.lmdb_buffers)
Expand All@@ -2797,9 +2809,9 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_sqlite3 is False, reason="needs sqlite3")
class TestArrayWithSQLiteStoreV3(TestArrayV3):
 def create_store(self):
 pytest.importorskip("sqlite3")
 path = mktemp(suffix=".db")
 atexit.register(atexit_rmtree, path)
 store = SQLiteStoreV3(path)
Expand Down

2 changes: 1 addition & 1 deletion
zarr/tests/test_storage.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -1396,7 +1396,7 @@ def s3(request):
 port = 5555
 endpoint_uri = "http://127.0.0.1:%d/" % port
 proc = subprocess.Popen(
 shlex.split("moto_server s3 -p %d" % port),
 shlex.split("moto_server -p %d" % port),
 stderr=subprocess.DEVNULL,
 stdout=subprocess.DEVNULL,
 )
Expand Down

24 changes: 24 additions & 0 deletions
zarr/tests/util.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -69,6 +69,30 @@ def skip_test_env_var(name):
 have_fsspec = False


try:
 import bsddb3 # noqa: F401

 have_bsddb3 = True
except ImportError: # pragma: no cover
 have_bsddb3 = False


try:
 import lmdb # noqa: F401

 have_lmdb = True
except ImportError: # pragma: no cover
 have_lmdb = False


try:
 import sqlite3 # noqa: F401

 have_sqlite3 = True
except ImportError: # pragma: no cover
 have_sqlite3 = False


def abs_container():
 from azure.core.exceptions import ResourceExistsError
 import azure.storage.blob as asb
Expand Down

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Update release.rst#1621

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

 Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and
privacy statement. We’ll occasionally send you account related emails.

Already on GitHub?
Sign in
to your account

 Merged

joshmoore
merged 17 commits into

from

Feb 14, 2024
 Merged


Update release.rst
#1621
Show file tree
Hide file tree
 Changes from all commits
Commits

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17 commits


Select commit
Hold shift + click to select a range
f50296c

Update release.rst


sanketverma1704 Dec 27, 2023
3df1849

Merge branch 'main' into update_release_notes


d-v-b Jan 9, 2024
aaf5a30

Update release.rst


sanketverma1704 Jan 23, 2024
d069205

Merge branch 'main' into update_release_notes


sanketverma1704 Jan 23, 2024
e28e1c9

Change 2.16.2 → 2.17.0


sanketverma1704 Jan 29, 2024
6a70b30

Update moto for test_s3


joshmoore Feb 5, 2024
6ff474e

Skip bsddb3 tests to prevent warning failure


joshmoore Feb 5, 2024
37e6e1f

Fix more user warning tests


joshmoore Feb 5, 2024
4f7b7b2

Fix even more user warning tests


joshmoore Feb 5, 2024
bfa1db4

Skip coverage for importorskips


joshmoore Feb 5, 2024
827545d

Merge branch 'main' into update_release_notes


joshmoore Feb 14, 2024
195b447

Move to have_X skip method for deps


joshmoore Feb 14, 2024
3092f42

Update release.rst (PR#1663)


sanketverma1704 Feb 14, 2024
1e756c6

Fix test_core.py 'compile' issues


joshmoore Feb 14, 2024
af91f8d

Add black formatting


joshmoore Feb 14, 2024
f375f95

Drop Windows/3.9 build due to unrelated failures


joshmoore Feb 14, 2024
06f903d

fix typo


joshmoore Feb 14, 2024

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2 changes: 1 addition & 1 deletion
.github/workflows/windows-testing.yml

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -16,7 +16,7 @@ jobs:
 strategy:
 fail-fast: True
 matrix:
 python-version: ['3.9', '3.10', '3.11']
 python-version: ['3.10', '3.11']
 steps:
 - uses: actions/checkout@v4
 with:
Expand Down

40 changes: 40 additions & 0 deletions
docs/release.rst

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -18,12 +18,20 @@ Release notes
Unreleased
----------

.. _release_2.17.0:

2.17.0
------

Enhancements
~~~~~~~~~~~~

* Added type hints to ``zarr.creation.create()``.
 By :user:`David Stansby <dstansby>` :issue:`1536`.

* Pyodide support: Don't require fasteners on Emscripten.
 By :user:`Hood Chatham <hoodmane>` :issue:`1663`.

Docs
~~~~

Expand All@@ -45,9 +53,21 @@ Docs
* Minor tweak to advanced indexing tutorial examples.
 By :user:`Ross Barnowski <rossbar>` :issue:`1550`.

* Automatically document array members using sphinx-automodapi.
 By :user:`David Stansby <dstansby>` :issue:`1547`.

* Add a markdown file documenting the current and former core-developer team.
 By :user:`Joe Hamman <jhamman>` :issue:`1628`.

* Add Norman Rzepka to core-dev team.
 By :user:`Joe Hamman <jhamman>` :issue:`1630`.

* Added section about accessing zip files that are on s3.
 By :user:`Jeff Peck <jeffpeck10x>` :issue:`1613`.

* Add V3 roadmap and design document.
 By :user:`Joe Hamman <jhamman>` :issue:`1583`.

Maintenance
~~~~~~~~~~~

Expand DownExpand Up@@ -75,6 +95,26 @@ Maintenance
* Remove ``sphinx-rtd-theme`` dependency from ``pyproject.toml``.
 By :user:`Sanket Verma <MSanKeys963>` :issue:`1563`.

* Remove ``CODE_OF_CONDUCT.md`` file from the Zarr-Python repository.
 By :user:`Sanket Verma <MSanKeys963>` :issue:`1572`.

* Bump version of black in pre-commit.
 By :user:`David Stansby <dtstansby>` :issue:`1559`.

* Use list comprehension where applicable.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1555`.

* Use format specification mini-language to format string.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1558`.

* Single startswith() call instead of multiple ones.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1556`.

* Move codespell options around.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1196`.

* Remove unused mypy ignore comments.
 By :user:`David Stansby <dtstansby>` :issue:`1602`.

.. _release_2.16.1:

Expand Down

2 changes: 1 addition & 1 deletion
requirements_dev_optional.txt

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -20,4 +20,4 @@ pytest-timeout==2.2.0
h5py==3.10.0
fsspec==2023.12.2
s3fs==2023.12.2
moto[server]>=4.0.8
moto[server]>=5.0.1

28 changes: 20 additions & 8 deletions
zarr/tests/test_core.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -73,7 +73,15 @@
)
from zarr.tests.test_storage_v3 import DummyStorageTransfomer
from zarr.util import buffer_size
from zarr.tests.util import abs_container, skip_test_env_var, have_fsspec, mktemp
from zarr.tests.util import (
 abs_container,
 have_bsddb3,
 have_fsspec,
 have_lmdb,
 have_sqlite3,
 mktemp,
 skip_test_env_var,
)
from zarr.types import DIMENSION_SEPARATOR

# noinspection PyMethodMayBeStatic
Expand DownExpand Up@@ -2038,9 +2046,11 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_bsddb3 is False, reason="needs bsddb3")
class TestArrayWithDBMStoreBerkeleyDB(TestArray):
 def create_store(self):
 bsddb3 = pytest.importorskip("bsddb3")
 import bsddb3

 path = mktemp(suffix=".dbm")
 atexit.register(os.remove, path)
 store = DBMStore(path, flag="n", open=bsddb3.btopen)
Expand All@@ -2050,9 +2060,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStore(TestArray):
 def create_store(self):
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStore(path, buffers=True)
Expand All@@ -2065,9 +2075,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStoreNoBuffers(TestArray):
 def create_store(self):
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStore(path, buffers=False)
Expand All@@ -2077,9 +2087,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_sqlite3 is False, reason="needs sqlite3")
class TestArrayWithSQLiteStore(TestArray):
 def create_store(self):
 pytest.importorskip("sqlite3")
 path = mktemp(suffix=".db")
 atexit.register(atexit_rmtree, path)
 store = SQLiteStore(path)
Expand DownExpand Up@@ -2758,9 +2768,11 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_bsddb3 is False, reason="needs bsddb3")
class TestArrayWithDBMStoreV3BerkeleyDB(TestArrayV3):
 def create_store(self) -> DBMStoreV3:
 bsddb3 = pytest.importorskip("bsddb3")
 import bsddb3

 path = mktemp(suffix=".dbm")
 atexit.register(os.remove, path)
 store = DBMStoreV3(path, flag="n", open=bsddb3.btopen)
Expand All@@ -2771,11 +2783,11 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStoreV3(TestArrayV3):
 lmdb_buffers = True

 def create_store(self) -> LMDBStoreV3:
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStoreV3(path, buffers=self.lmdb_buffers)
Expand All@@ -2797,9 +2809,9 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_sqlite3 is False, reason="needs sqlite3")
class TestArrayWithSQLiteStoreV3(TestArrayV3):
 def create_store(self):
 pytest.importorskip("sqlite3")
 path = mktemp(suffix=".db")
 atexit.register(atexit_rmtree, path)
 store = SQLiteStoreV3(path)
Expand Down

2 changes: 1 addition & 1 deletion
zarr/tests/test_storage.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -1396,7 +1396,7 @@ def s3(request):
 port = 5555
 endpoint_uri = "http://127.0.0.1:%d/" % port
 proc = subprocess.Popen(
 shlex.split("moto_server s3 -p %d" % port),
 shlex.split("moto_server -p %d" % port),
 stderr=subprocess.DEVNULL,
 stdout=subprocess.DEVNULL,
 )
Expand Down

24 changes: 24 additions & 0 deletions
zarr/tests/util.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -69,6 +69,30 @@ def skip_test_env_var(name):
 have_fsspec = False


try:
 import bsddb3 # noqa: F401

 have_bsddb3 = True
except ImportError: # pragma: no cover
 have_bsddb3 = False


try:
 import lmdb # noqa: F401

 have_lmdb = True
except ImportError: # pragma: no cover
 have_lmdb = False


try:
 import sqlite3 # noqa: F401

 have_sqlite3 = True
except ImportError: # pragma: no cover
 have_sqlite3 = False


def abs_container():
 from azure.core.exceptions import ResourceExistsError
 import azure.storage.blob as asb
Expand Down

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Update release.rst#1621

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 Merged

joshmoore
merged 17 commits into

from

Feb 14, 2024
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Update release.rst
#1621
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f50296c

Update release.rst


sanketverma1704 Dec 27, 2023
3df1849

Merge branch 'main' into update_release_notes


d-v-b Jan 9, 2024
aaf5a30

Update release.rst


sanketverma1704 Jan 23, 2024
d069205

Merge branch 'main' into update_release_notes


sanketverma1704 Jan 23, 2024
e28e1c9

Change 2.16.2 → 2.17.0


sanketverma1704 Jan 29, 2024
6a70b30

Update moto for test_s3


joshmoore Feb 5, 2024
6ff474e

Skip bsddb3 tests to prevent warning failure


joshmoore Feb 5, 2024
37e6e1f

Fix more user warning tests


joshmoore Feb 5, 2024
4f7b7b2

Fix even more user warning tests


joshmoore Feb 5, 2024
bfa1db4

Skip coverage for importorskips


joshmoore Feb 5, 2024
827545d

Merge branch 'main' into update_release_notes


joshmoore Feb 14, 2024
195b447

Move to have_X skip method for deps


joshmoore Feb 14, 2024
3092f42

Update release.rst (PR#1663)


sanketverma1704 Feb 14, 2024
1e756c6

Fix test_core.py 'compile' issues


joshmoore Feb 14, 2024
af91f8d

Add black formatting


joshmoore Feb 14, 2024
f375f95

Drop Windows/3.9 build due to unrelated failures


joshmoore Feb 14, 2024
06f903d

fix typo


joshmoore Feb 14, 2024

File filter

Filter by extension
Filter by extension
Conversations

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Loading
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2 changes: 1 addition & 1 deletion
.github/workflows/windows-testing.yml

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -16,7 +16,7 @@ jobs:
 strategy:
 fail-fast: True
 matrix:
 python-version: ['3.9', '3.10', '3.11']
 python-version: ['3.10', '3.11']
 steps:
 - uses: actions/checkout@v4
 with:
Expand Down

40 changes: 40 additions & 0 deletions
docs/release.rst

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -18,12 +18,20 @@ Release notes
Unreleased
----------

.. _release_2.17.0:

2.17.0
------

Enhancements
~~~~~~~~~~~~

* Added type hints to ``zarr.creation.create()``.
 By :user:`David Stansby <dstansby>` :issue:`1536`.

* Pyodide support: Don't require fasteners on Emscripten.
 By :user:`Hood Chatham <hoodmane>` :issue:`1663`.

Docs
~~~~

Expand All@@ -45,9 +53,21 @@ Docs
* Minor tweak to advanced indexing tutorial examples.
 By :user:`Ross Barnowski <rossbar>` :issue:`1550`.

* Automatically document array members using sphinx-automodapi.
 By :user:`David Stansby <dstansby>` :issue:`1547`.

* Add a markdown file documenting the current and former core-developer team.
 By :user:`Joe Hamman <jhamman>` :issue:`1628`.

* Add Norman Rzepka to core-dev team.
 By :user:`Joe Hamman <jhamman>` :issue:`1630`.

* Added section about accessing zip files that are on s3.
 By :user:`Jeff Peck <jeffpeck10x>` :issue:`1613`.

* Add V3 roadmap and design document.
 By :user:`Joe Hamman <jhamman>` :issue:`1583`.

Maintenance
~~~~~~~~~~~

Expand DownExpand Up@@ -75,6 +95,26 @@ Maintenance
* Remove ``sphinx-rtd-theme`` dependency from ``pyproject.toml``.
 By :user:`Sanket Verma <MSanKeys963>` :issue:`1563`.

* Remove ``CODE_OF_CONDUCT.md`` file from the Zarr-Python repository.
 By :user:`Sanket Verma <MSanKeys963>` :issue:`1572`.

* Bump version of black in pre-commit.
 By :user:`David Stansby <dtstansby>` :issue:`1559`.

* Use list comprehension where applicable.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1555`.

* Use format specification mini-language to format string.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1558`.

* Single startswith() call instead of multiple ones.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1556`.

* Move codespell options around.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1196`.

* Remove unused mypy ignore comments.
 By :user:`David Stansby <dtstansby>` :issue:`1602`.

.. _release_2.16.1:

Expand Down

2 changes: 1 addition & 1 deletion
requirements_dev_optional.txt

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -20,4 +20,4 @@ pytest-timeout==2.2.0
h5py==3.10.0
fsspec==2023.12.2
s3fs==2023.12.2
moto[server]>=4.0.8
moto[server]>=5.0.1

28 changes: 20 additions & 8 deletions
zarr/tests/test_core.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -73,7 +73,15 @@
)
from zarr.tests.test_storage_v3 import DummyStorageTransfomer
from zarr.util import buffer_size
from zarr.tests.util import abs_container, skip_test_env_var, have_fsspec, mktemp
from zarr.tests.util import (
 abs_container,
 have_bsddb3,
 have_fsspec,
 have_lmdb,
 have_sqlite3,
 mktemp,
 skip_test_env_var,
)
from zarr.types import DIMENSION_SEPARATOR

# noinspection PyMethodMayBeStatic
Expand DownExpand Up@@ -2038,9 +2046,11 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_bsddb3 is False, reason="needs bsddb3")
class TestArrayWithDBMStoreBerkeleyDB(TestArray):
 def create_store(self):
 bsddb3 = pytest.importorskip("bsddb3")
 import bsddb3

 path = mktemp(suffix=".dbm")
 atexit.register(os.remove, path)
 store = DBMStore(path, flag="n", open=bsddb3.btopen)
Expand All@@ -2050,9 +2060,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStore(TestArray):
 def create_store(self):
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStore(path, buffers=True)
Expand All@@ -2065,9 +2075,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStoreNoBuffers(TestArray):
 def create_store(self):
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStore(path, buffers=False)
Expand All@@ -2077,9 +2087,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_sqlite3 is False, reason="needs sqlite3")
class TestArrayWithSQLiteStore(TestArray):
 def create_store(self):
 pytest.importorskip("sqlite3")
 path = mktemp(suffix=".db")
 atexit.register(atexit_rmtree, path)
 store = SQLiteStore(path)
Expand DownExpand Up@@ -2758,9 +2768,11 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_bsddb3 is False, reason="needs bsddb3")
class TestArrayWithDBMStoreV3BerkeleyDB(TestArrayV3):
 def create_store(self) -> DBMStoreV3:
 bsddb3 = pytest.importorskip("bsddb3")
 import bsddb3

 path = mktemp(suffix=".dbm")
 atexit.register(os.remove, path)
 store = DBMStoreV3(path, flag="n", open=bsddb3.btopen)
Expand All@@ -2771,11 +2783,11 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStoreV3(TestArrayV3):
 lmdb_buffers = True

 def create_store(self) -> LMDBStoreV3:
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStoreV3(path, buffers=self.lmdb_buffers)
Expand All@@ -2797,9 +2809,9 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_sqlite3 is False, reason="needs sqlite3")
class TestArrayWithSQLiteStoreV3(TestArrayV3):
 def create_store(self):
 pytest.importorskip("sqlite3")
 path = mktemp(suffix=".db")
 atexit.register(atexit_rmtree, path)
 store = SQLiteStoreV3(path)
Expand Down

2 changes: 1 addition & 1 deletion
zarr/tests/test_storage.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -1396,7 +1396,7 @@ def s3(request):
 port = 5555
 endpoint_uri = "http://127.0.0.1:%d/" % port
 proc = subprocess.Popen(
 shlex.split("moto_server s3 -p %d" % port),
 shlex.split("moto_server -p %d" % port),
 stderr=subprocess.DEVNULL,
 stdout=subprocess.DEVNULL,
 )
Expand Down

24 changes: 24 additions & 0 deletions
zarr/tests/util.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -69,6 +69,30 @@ def skip_test_env_var(name):
 have_fsspec = False


try:
 import bsddb3 # noqa: F401

 have_bsddb3 = True
except ImportError: # pragma: no cover
 have_bsddb3 = False


try:
 import lmdb # noqa: F401

 have_lmdb = True
except ImportError: # pragma: no cover
 have_lmdb = False


try:
 import sqlite3 # noqa: F401

 have_sqlite3 = True
except ImportError: # pragma: no cover
 have_sqlite3 = False


def abs_container():
 from azure.core.exceptions import ResourceExistsError
 import azure.storage.blob as asb
Expand Down

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
Update release.rst#1621

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

 Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and
privacy statement. We’ll occasionally send you account related emails.

Already on GitHub?
Sign in
to your account

 Merged

joshmoore
merged 17 commits into

from

Feb 14, 2024
 Merged


Update release.rst
#1621
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f50296c

Update release.rst


sanketverma1704 Dec 27, 2023
3df1849

Merge branch 'main' into update_release_notes


d-v-b Jan 9, 2024
aaf5a30

Update release.rst


sanketverma1704 Jan 23, 2024
d069205

Merge branch 'main' into update_release_notes


sanketverma1704 Jan 23, 2024
e28e1c9

Change 2.16.2 → 2.17.0


sanketverma1704 Jan 29, 2024
6a70b30

Update moto for test_s3


joshmoore Feb 5, 2024
6ff474e

Skip bsddb3 tests to prevent warning failure


joshmoore Feb 5, 2024
37e6e1f

Fix more user warning tests


joshmoore Feb 5, 2024
4f7b7b2

Fix even more user warning tests


joshmoore Feb 5, 2024
bfa1db4

Skip coverage for importorskips


joshmoore Feb 5, 2024
827545d

Merge branch 'main' into update_release_notes


joshmoore Feb 14, 2024
195b447

Move to have_X skip method for deps


joshmoore Feb 14, 2024
3092f42

Update release.rst (PR#1663)


sanketverma1704 Feb 14, 2024
1e756c6

Fix test_core.py 'compile' issues


joshmoore Feb 14, 2024
af91f8d

Add black formatting


joshmoore Feb 14, 2024
f375f95

Drop Windows/3.9 build due to unrelated failures


joshmoore Feb 14, 2024
06f903d

fix typo


joshmoore Feb 14, 2024

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2 changes: 1 addition & 1 deletion
.github/workflows/windows-testing.yml

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -16,7 +16,7 @@ jobs:
 strategy:
 fail-fast: True
 matrix:
 python-version: ['3.9', '3.10', '3.11']
 python-version: ['3.10', '3.11']
 steps:
 - uses: actions/checkout@v4
 with:
Expand Down

40 changes: 40 additions & 0 deletions
docs/release.rst

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -18,12 +18,20 @@ Release notes
Unreleased
----------

.. _release_2.17.0:

2.17.0
------

Enhancements
~~~~~~~~~~~~

* Added type hints to ``zarr.creation.create()``.
 By :user:`David Stansby <dstansby>` :issue:`1536`.

* Pyodide support: Don't require fasteners on Emscripten.
 By :user:`Hood Chatham <hoodmane>` :issue:`1663`.

Docs
~~~~

Expand All@@ -45,9 +53,21 @@ Docs
* Minor tweak to advanced indexing tutorial examples.
 By :user:`Ross Barnowski <rossbar>` :issue:`1550`.

* Automatically document array members using sphinx-automodapi.
 By :user:`David Stansby <dstansby>` :issue:`1547`.

* Add a markdown file documenting the current and former core-developer team.
 By :user:`Joe Hamman <jhamman>` :issue:`1628`.

* Add Norman Rzepka to core-dev team.
 By :user:`Joe Hamman <jhamman>` :issue:`1630`.

* Added section about accessing zip files that are on s3.
 By :user:`Jeff Peck <jeffpeck10x>` :issue:`1613`.

* Add V3 roadmap and design document.
 By :user:`Joe Hamman <jhamman>` :issue:`1583`.

Maintenance
~~~~~~~~~~~

Expand DownExpand Up@@ -75,6 +95,26 @@ Maintenance
* Remove ``sphinx-rtd-theme`` dependency from ``pyproject.toml``.
 By :user:`Sanket Verma <MSanKeys963>` :issue:`1563`.

* Remove ``CODE_OF_CONDUCT.md`` file from the Zarr-Python repository.
 By :user:`Sanket Verma <MSanKeys963>` :issue:`1572`.

* Bump version of black in pre-commit.
 By :user:`David Stansby <dtstansby>` :issue:`1559`.

* Use list comprehension where applicable.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1555`.

* Use format specification mini-language to format string.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1558`.

* Single startswith() call instead of multiple ones.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1556`.

* Move codespell options around.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1196`.

* Remove unused mypy ignore comments.
 By :user:`David Stansby <dtstansby>` :issue:`1602`.

.. _release_2.16.1:

Expand Down

2 changes: 1 addition & 1 deletion
requirements_dev_optional.txt

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -20,4 +20,4 @@ pytest-timeout==2.2.0
h5py==3.10.0
fsspec==2023.12.2
s3fs==2023.12.2
moto[server]>=4.0.8
moto[server]>=5.0.1

28 changes: 20 additions & 8 deletions
zarr/tests/test_core.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -73,7 +73,15 @@
)
from zarr.tests.test_storage_v3 import DummyStorageTransfomer
from zarr.util import buffer_size
from zarr.tests.util import abs_container, skip_test_env_var, have_fsspec, mktemp
from zarr.tests.util import (
 abs_container,
 have_bsddb3,
 have_fsspec,
 have_lmdb,
 have_sqlite3,
 mktemp,
 skip_test_env_var,
)
from zarr.types import DIMENSION_SEPARATOR

# noinspection PyMethodMayBeStatic
Expand DownExpand Up@@ -2038,9 +2046,11 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_bsddb3 is False, reason="needs bsddb3")
class TestArrayWithDBMStoreBerkeleyDB(TestArray):
 def create_store(self):
 bsddb3 = pytest.importorskip("bsddb3")
 import bsddb3

 path = mktemp(suffix=".dbm")
 atexit.register(os.remove, path)
 store = DBMStore(path, flag="n", open=bsddb3.btopen)
Expand All@@ -2050,9 +2060,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStore(TestArray):
 def create_store(self):
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStore(path, buffers=True)
Expand All@@ -2065,9 +2075,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStoreNoBuffers(TestArray):
 def create_store(self):
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStore(path, buffers=False)
Expand All@@ -2077,9 +2087,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_sqlite3 is False, reason="needs sqlite3")
class TestArrayWithSQLiteStore(TestArray):
 def create_store(self):
 pytest.importorskip("sqlite3")
 path = mktemp(suffix=".db")
 atexit.register(atexit_rmtree, path)
 store = SQLiteStore(path)
Expand DownExpand Up@@ -2758,9 +2768,11 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_bsddb3 is False, reason="needs bsddb3")
class TestArrayWithDBMStoreV3BerkeleyDB(TestArrayV3):
 def create_store(self) -> DBMStoreV3:
 bsddb3 = pytest.importorskip("bsddb3")
 import bsddb3

 path = mktemp(suffix=".dbm")
 atexit.register(os.remove, path)
 store = DBMStoreV3(path, flag="n", open=bsddb3.btopen)
Expand All@@ -2771,11 +2783,11 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStoreV3(TestArrayV3):
 lmdb_buffers = True

 def create_store(self) -> LMDBStoreV3:
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStoreV3(path, buffers=self.lmdb_buffers)
Expand All@@ -2797,9 +2809,9 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_sqlite3 is False, reason="needs sqlite3")
class TestArrayWithSQLiteStoreV3(TestArrayV3):
 def create_store(self):
 pytest.importorskip("sqlite3")
 path = mktemp(suffix=".db")
 atexit.register(atexit_rmtree, path)
 store = SQLiteStoreV3(path)
Expand Down

2 changes: 1 addition & 1 deletion
zarr/tests/test_storage.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -1396,7 +1396,7 @@ def s3(request):
 port = 5555
 endpoint_uri = "http://127.0.0.1:%d/" % port
 proc = subprocess.Popen(
 shlex.split("moto_server s3 -p %d" % port),
 shlex.split("moto_server -p %d" % port),
 stderr=subprocess.DEVNULL,
 stdout=subprocess.DEVNULL,
 )
Expand Down

24 changes: 24 additions & 0 deletions
zarr/tests/util.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -69,6 +69,30 @@ def skip_test_env_var(name):
 have_fsspec = False


try:
 import bsddb3 # noqa: F401

 have_bsddb3 = True
except ImportError: # pragma: no cover
 have_bsddb3 = False


try:
 import lmdb # noqa: F401

 have_lmdb = True
except ImportError: # pragma: no cover
 have_lmdb = False


try:
 import sqlite3 # noqa: F401

 have_sqlite3 = True
except ImportError: # pragma: no cover
 have_sqlite3 = False


def abs_container():
 from azure.core.exceptions import ResourceExistsError
 import azure.storage.blob as asb
Expand Down

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Update release.rst#1621

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to your account

 Merged

joshmoore
merged 17 commits into

from

Feb 14, 2024
 Merged


Update release.rst
#1621
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f50296c

Update release.rst


sanketverma1704 Dec 27, 2023
3df1849

Merge branch 'main' into update_release_notes


d-v-b Jan 9, 2024
aaf5a30

Update release.rst


sanketverma1704 Jan 23, 2024
d069205

Merge branch 'main' into update_release_notes


sanketverma1704 Jan 23, 2024
e28e1c9

Change 2.16.2 → 2.17.0


sanketverma1704 Jan 29, 2024
6a70b30

Update moto for test_s3


joshmoore Feb 5, 2024
6ff474e

Skip bsddb3 tests to prevent warning failure


joshmoore Feb 5, 2024
37e6e1f

Fix more user warning tests


joshmoore Feb 5, 2024
4f7b7b2

Fix even more user warning tests


joshmoore Feb 5, 2024
bfa1db4

Skip coverage for importorskips


joshmoore Feb 5, 2024
827545d

Merge branch 'main' into update_release_notes


joshmoore Feb 14, 2024
195b447

Move to have_X skip method for deps


joshmoore Feb 14, 2024
3092f42

Update release.rst (PR#1663)


sanketverma1704 Feb 14, 2024
1e756c6

Fix test_core.py 'compile' issues


joshmoore Feb 14, 2024
af91f8d

Add black formatting


joshmoore Feb 14, 2024
f375f95

Drop Windows/3.9 build due to unrelated failures


joshmoore Feb 14, 2024
06f903d

fix typo


joshmoore Feb 14, 2024

File filter

Filter by extension
Filter by extension
Conversations

Failed to load comments. 
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2 changes: 1 addition & 1 deletion
.github/workflows/windows-testing.yml

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -16,7 +16,7 @@ jobs:
 strategy:
 fail-fast: True
 matrix:
 python-version: ['3.9', '3.10', '3.11']
 python-version: ['3.10', '3.11']
 steps:
 - uses: actions/checkout@v4
 with:
Expand Down

40 changes: 40 additions & 0 deletions
docs/release.rst

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -18,12 +18,20 @@ Release notes
Unreleased
----------

.. _release_2.17.0:

2.17.0
------

Enhancements
~~~~~~~~~~~~

* Added type hints to ``zarr.creation.create()``.
 By :user:`David Stansby <dstansby>` :issue:`1536`.

* Pyodide support: Don't require fasteners on Emscripten.
 By :user:`Hood Chatham <hoodmane>` :issue:`1663`.

Docs
~~~~

Expand All@@ -45,9 +53,21 @@ Docs
* Minor tweak to advanced indexing tutorial examples.
 By :user:`Ross Barnowski <rossbar>` :issue:`1550`.

* Automatically document array members using sphinx-automodapi.
 By :user:`David Stansby <dstansby>` :issue:`1547`.

* Add a markdown file documenting the current and former core-developer team.
 By :user:`Joe Hamman <jhamman>` :issue:`1628`.

* Add Norman Rzepka to core-dev team.
 By :user:`Joe Hamman <jhamman>` :issue:`1630`.

* Added section about accessing zip files that are on s3.
 By :user:`Jeff Peck <jeffpeck10x>` :issue:`1613`.

* Add V3 roadmap and design document.
 By :user:`Joe Hamman <jhamman>` :issue:`1583`.

Maintenance
~~~~~~~~~~~

Expand DownExpand Up@@ -75,6 +95,26 @@ Maintenance
* Remove ``sphinx-rtd-theme`` dependency from ``pyproject.toml``.
 By :user:`Sanket Verma <MSanKeys963>` :issue:`1563`.

* Remove ``CODE_OF_CONDUCT.md`` file from the Zarr-Python repository.
 By :user:`Sanket Verma <MSanKeys963>` :issue:`1572`.

* Bump version of black in pre-commit.
 By :user:`David Stansby <dtstansby>` :issue:`1559`.

* Use list comprehension where applicable.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1555`.

* Use format specification mini-language to format string.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1558`.

* Single startswith() call instead of multiple ones.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1556`.

* Move codespell options around.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1196`.

* Remove unused mypy ignore comments.
 By :user:`David Stansby <dtstansby>` :issue:`1602`.

.. _release_2.16.1:

Expand Down

2 changes: 1 addition & 1 deletion
requirements_dev_optional.txt

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -20,4 +20,4 @@ pytest-timeout==2.2.0
h5py==3.10.0
fsspec==2023.12.2
s3fs==2023.12.2
moto[server]>=4.0.8
moto[server]>=5.0.1

28 changes: 20 additions & 8 deletions
zarr/tests/test_core.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -73,7 +73,15 @@
)
from zarr.tests.test_storage_v3 import DummyStorageTransfomer
from zarr.util import buffer_size
from zarr.tests.util import abs_container, skip_test_env_var, have_fsspec, mktemp
from zarr.tests.util import (
 abs_container,
 have_bsddb3,
 have_fsspec,
 have_lmdb,
 have_sqlite3,
 mktemp,
 skip_test_env_var,
)
from zarr.types import DIMENSION_SEPARATOR

# noinspection PyMethodMayBeStatic
Expand DownExpand Up@@ -2038,9 +2046,11 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_bsddb3 is False, reason="needs bsddb3")
class TestArrayWithDBMStoreBerkeleyDB(TestArray):
 def create_store(self):
 bsddb3 = pytest.importorskip("bsddb3")
 import bsddb3

 path = mktemp(suffix=".dbm")
 atexit.register(os.remove, path)
 store = DBMStore(path, flag="n", open=bsddb3.btopen)
Expand All@@ -2050,9 +2060,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStore(TestArray):
 def create_store(self):
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStore(path, buffers=True)
Expand All@@ -2065,9 +2075,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStoreNoBuffers(TestArray):
 def create_store(self):
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStore(path, buffers=False)
Expand All@@ -2077,9 +2087,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_sqlite3 is False, reason="needs sqlite3")
class TestArrayWithSQLiteStore(TestArray):
 def create_store(self):
 pytest.importorskip("sqlite3")
 path = mktemp(suffix=".db")
 atexit.register(atexit_rmtree, path)
 store = SQLiteStore(path)
Expand DownExpand Up@@ -2758,9 +2768,11 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_bsddb3 is False, reason="needs bsddb3")
class TestArrayWithDBMStoreV3BerkeleyDB(TestArrayV3):
 def create_store(self) -> DBMStoreV3:
 bsddb3 = pytest.importorskip("bsddb3")
 import bsddb3

 path = mktemp(suffix=".dbm")
 atexit.register(os.remove, path)
 store = DBMStoreV3(path, flag="n", open=bsddb3.btopen)
Expand All@@ -2771,11 +2783,11 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStoreV3(TestArrayV3):
 lmdb_buffers = True

 def create_store(self) -> LMDBStoreV3:
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStoreV3(path, buffers=self.lmdb_buffers)
Expand All@@ -2797,9 +2809,9 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_sqlite3 is False, reason="needs sqlite3")
class TestArrayWithSQLiteStoreV3(TestArrayV3):
 def create_store(self):
 pytest.importorskip("sqlite3")
 path = mktemp(suffix=".db")
 atexit.register(atexit_rmtree, path)
 store = SQLiteStoreV3(path)
Expand Down

2 changes: 1 addition & 1 deletion
zarr/tests/test_storage.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -1396,7 +1396,7 @@ def s3(request):
 port = 5555
 endpoint_uri = "http://127.0.0.1:%d/" % port
 proc = subprocess.Popen(
 shlex.split("moto_server s3 -p %d" % port),
 shlex.split("moto_server -p %d" % port),
 stderr=subprocess.DEVNULL,
 stdout=subprocess.DEVNULL,
 )
Expand Down

24 changes: 24 additions & 0 deletions
zarr/tests/util.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -69,6 +69,30 @@ def skip_test_env_var(name):
 have_fsspec = False


try:
 import bsddb3 # noqa: F401

 have_bsddb3 = True
except ImportError: # pragma: no cover
 have_bsddb3 = False


try:
 import lmdb # noqa: F401

 have_lmdb = True
except ImportError: # pragma: no cover
 have_lmdb = False


try:
 import sqlite3 # noqa: F401

 have_sqlite3 = True
except ImportError: # pragma: no cover
 have_sqlite3 = False


def abs_container():
 from azure.core.exceptions import ResourceExistsError
 import azure.storage.blob as asb
Expand Down

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Update release.rst#1621

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

 Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and
privacy statement. We’ll occasionally send you account related emails.

Already on GitHub?
Sign in
to your account

 Merged

joshmoore
merged 17 commits into

from

Feb 14, 2024
 Merged


Update release.rst
#1621
Show file tree
Hide file tree
 Changes from all commits
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17 commits


Select commit
Hold shift + click to select a range
f50296c

Update release.rst


sanketverma1704 Dec 27, 2023
3df1849

Merge branch 'main' into update_release_notes


d-v-b Jan 9, 2024
aaf5a30

Update release.rst


sanketverma1704 Jan 23, 2024
d069205

Merge branch 'main' into update_release_notes


sanketverma1704 Jan 23, 2024
e28e1c9

Change 2.16.2 → 2.17.0


sanketverma1704 Jan 29, 2024
6a70b30

Update moto for test_s3


joshmoore Feb 5, 2024
6ff474e

Skip bsddb3 tests to prevent warning failure


joshmoore Feb 5, 2024
37e6e1f

Fix more user warning tests


joshmoore Feb 5, 2024
4f7b7b2

Fix even more user warning tests


joshmoore Feb 5, 2024
bfa1db4

Skip coverage for importorskips


joshmoore Feb 5, 2024
827545d

Merge branch 'main' into update_release_notes


joshmoore Feb 14, 2024
195b447

Move to have_X skip method for deps


joshmoore Feb 14, 2024
3092f42

Update release.rst (PR#1663)


sanketverma1704 Feb 14, 2024
1e756c6

Fix test_core.py 'compile' issues


joshmoore Feb 14, 2024
af91f8d

Add black formatting


joshmoore Feb 14, 2024
f375f95

Drop Windows/3.9 build due to unrelated failures


joshmoore Feb 14, 2024
06f903d

fix typo


joshmoore Feb 14, 2024

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2 changes: 1 addition & 1 deletion
.github/workflows/windows-testing.yml

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -16,7 +16,7 @@ jobs:
 strategy:
 fail-fast: True
 matrix:
 python-version: ['3.9', '3.10', '3.11']
 python-version: ['3.10', '3.11']
 steps:
 - uses: actions/checkout@v4
 with:
Expand Down

40 changes: 40 additions & 0 deletions
docs/release.rst

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Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -18,12 +18,20 @@ Release notes
Unreleased
----------

.. _release_2.17.0:

2.17.0
------

Enhancements
~~~~~~~~~~~~

* Added type hints to ``zarr.creation.create()``.
 By :user:`David Stansby <dstansby>` :issue:`1536`.

* Pyodide support: Don't require fasteners on Emscripten.
 By :user:`Hood Chatham <hoodmane>` :issue:`1663`.

Docs
~~~~

Expand All@@ -45,9 +53,21 @@ Docs
* Minor tweak to advanced indexing tutorial examples.
 By :user:`Ross Barnowski <rossbar>` :issue:`1550`.

* Automatically document array members using sphinx-automodapi.
 By :user:`David Stansby <dstansby>` :issue:`1547`.

* Add a markdown file documenting the current and former core-developer team.
 By :user:`Joe Hamman <jhamman>` :issue:`1628`.

* Add Norman Rzepka to core-dev team.
 By :user:`Joe Hamman <jhamman>` :issue:`1630`.

* Added section about accessing zip files that are on s3.
 By :user:`Jeff Peck <jeffpeck10x>` :issue:`1613`.

* Add V3 roadmap and design document.
 By :user:`Joe Hamman <jhamman>` :issue:`1583`.

Maintenance
~~~~~~~~~~~

Expand DownExpand Up@@ -75,6 +95,26 @@ Maintenance
* Remove ``sphinx-rtd-theme`` dependency from ``pyproject.toml``.
 By :user:`Sanket Verma <MSanKeys963>` :issue:`1563`.

* Remove ``CODE_OF_CONDUCT.md`` file from the Zarr-Python repository.
 By :user:`Sanket Verma <MSanKeys963>` :issue:`1572`.

* Bump version of black in pre-commit.
 By :user:`David Stansby <dtstansby>` :issue:`1559`.

* Use list comprehension where applicable.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1555`.

* Use format specification mini-language to format string.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1558`.

* Single startswith() call instead of multiple ones.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1556`.

* Move codespell options around.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1196`.

* Remove unused mypy ignore comments.
 By :user:`David Stansby <dtstansby>` :issue:`1602`.

.. _release_2.16.1:

Expand Down

2 changes: 1 addition & 1 deletion
requirements_dev_optional.txt

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -20,4 +20,4 @@ pytest-timeout==2.2.0
h5py==3.10.0
fsspec==2023.12.2
s3fs==2023.12.2
moto[server]>=4.0.8
moto[server]>=5.0.1

28 changes: 20 additions & 8 deletions
zarr/tests/test_core.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -73,7 +73,15 @@
)
from zarr.tests.test_storage_v3 import DummyStorageTransfomer
from zarr.util import buffer_size
from zarr.tests.util import abs_container, skip_test_env_var, have_fsspec, mktemp
from zarr.tests.util import (
 abs_container,
 have_bsddb3,
 have_fsspec,
 have_lmdb,
 have_sqlite3,
 mktemp,
 skip_test_env_var,
)
from zarr.types import DIMENSION_SEPARATOR

# noinspection PyMethodMayBeStatic
Expand DownExpand Up@@ -2038,9 +2046,11 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_bsddb3 is False, reason="needs bsddb3")
class TestArrayWithDBMStoreBerkeleyDB(TestArray):
 def create_store(self):
 bsddb3 = pytest.importorskip("bsddb3")
 import bsddb3

 path = mktemp(suffix=".dbm")
 atexit.register(os.remove, path)
 store = DBMStore(path, flag="n", open=bsddb3.btopen)
Expand All@@ -2050,9 +2060,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStore(TestArray):
 def create_store(self):
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStore(path, buffers=True)
Expand All@@ -2065,9 +2075,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStoreNoBuffers(TestArray):
 def create_store(self):
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStore(path, buffers=False)
Expand All@@ -2077,9 +2087,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_sqlite3 is False, reason="needs sqlite3")
class TestArrayWithSQLiteStore(TestArray):
 def create_store(self):
 pytest.importorskip("sqlite3")
 path = mktemp(suffix=".db")
 atexit.register(atexit_rmtree, path)
 store = SQLiteStore(path)
Expand DownExpand Up@@ -2758,9 +2768,11 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_bsddb3 is False, reason="needs bsddb3")
class TestArrayWithDBMStoreV3BerkeleyDB(TestArrayV3):
 def create_store(self) -> DBMStoreV3:
 bsddb3 = pytest.importorskip("bsddb3")
 import bsddb3

 path = mktemp(suffix=".dbm")
 atexit.register(os.remove, path)
 store = DBMStoreV3(path, flag="n", open=bsddb3.btopen)
Expand All@@ -2771,11 +2783,11 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStoreV3(TestArrayV3):
 lmdb_buffers = True

 def create_store(self) -> LMDBStoreV3:
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStoreV3(path, buffers=self.lmdb_buffers)
Expand All@@ -2797,9 +2809,9 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_sqlite3 is False, reason="needs sqlite3")
class TestArrayWithSQLiteStoreV3(TestArrayV3):
 def create_store(self):
 pytest.importorskip("sqlite3")
 path = mktemp(suffix=".db")
 atexit.register(atexit_rmtree, path)
 store = SQLiteStoreV3(path)
Expand Down

2 changes: 1 addition & 1 deletion
zarr/tests/test_storage.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -1396,7 +1396,7 @@ def s3(request):
 port = 5555
 endpoint_uri = "http://127.0.0.1:%d/" % port
 proc = subprocess.Popen(
 shlex.split("moto_server s3 -p %d" % port),
 shlex.split("moto_server -p %d" % port),
 stderr=subprocess.DEVNULL,
 stdout=subprocess.DEVNULL,
 )
Expand Down

24 changes: 24 additions & 0 deletions
zarr/tests/util.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -69,6 +69,30 @@ def skip_test_env_var(name):
 have_fsspec = False


try:
 import bsddb3 # noqa: F401

 have_bsddb3 = True
except ImportError: # pragma: no cover
 have_bsddb3 = False


try:
 import lmdb # noqa: F401

 have_lmdb = True
except ImportError: # pragma: no cover
 have_lmdb = False


try:
 import sqlite3 # noqa: F401

 have_sqlite3 = True
except ImportError: # pragma: no cover
 have_sqlite3 = False


def abs_container():
 from azure.core.exceptions import ResourceExistsError
 import azure.storage.blob as asb
Expand Down

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

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 Merged

joshmoore
merged 17 commits into

from

Feb 14, 2024
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Update release.rst
#1621
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f50296c

Update release.rst


sanketverma1704 Dec 27, 2023
3df1849

Merge branch 'main' into update_release_notes


d-v-b Jan 9, 2024
aaf5a30

Update release.rst


sanketverma1704 Jan 23, 2024
d069205

Merge branch 'main' into update_release_notes


sanketverma1704 Jan 23, 2024
e28e1c9

Change 2.16.2 → 2.17.0


sanketverma1704 Jan 29, 2024
6a70b30

Update moto for test_s3


joshmoore Feb 5, 2024
6ff474e

Skip bsddb3 tests to prevent warning failure


joshmoore Feb 5, 2024
37e6e1f

Fix more user warning tests


joshmoore Feb 5, 2024
4f7b7b2

Fix even more user warning tests


joshmoore Feb 5, 2024
bfa1db4

Skip coverage for importorskips


joshmoore Feb 5, 2024
827545d

Merge branch 'main' into update_release_notes


joshmoore Feb 14, 2024
195b447

Move to have_X skip method for deps


joshmoore Feb 14, 2024
3092f42

Update release.rst (PR#1663)


sanketverma1704 Feb 14, 2024
1e756c6

Fix test_core.py 'compile' issues


joshmoore Feb 14, 2024
af91f8d

Add black formatting


joshmoore Feb 14, 2024
f375f95

Drop Windows/3.9 build due to unrelated failures


joshmoore Feb 14, 2024
06f903d

fix typo


joshmoore Feb 14, 2024

File filter

Filter by extension
Filter by extension
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2 changes: 1 addition & 1 deletion
.github/workflows/windows-testing.yml

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -16,7 +16,7 @@ jobs:
 strategy:
 fail-fast: True
 matrix:
 python-version: ['3.9', '3.10', '3.11']
 python-version: ['3.10', '3.11']
 steps:
 - uses: actions/checkout@v4
 with:
Expand Down

40 changes: 40 additions & 0 deletions
docs/release.rst

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -18,12 +18,20 @@ Release notes
Unreleased
----------

.. _release_2.17.0:

2.17.0
------

Enhancements
~~~~~~~~~~~~

* Added type hints to ``zarr.creation.create()``.
 By :user:`David Stansby <dstansby>` :issue:`1536`.

* Pyodide support: Don't require fasteners on Emscripten.
 By :user:`Hood Chatham <hoodmane>` :issue:`1663`.

Docs
~~~~

Expand All@@ -45,9 +53,21 @@ Docs
* Minor tweak to advanced indexing tutorial examples.
 By :user:`Ross Barnowski <rossbar>` :issue:`1550`.

* Automatically document array members using sphinx-automodapi.
 By :user:`David Stansby <dstansby>` :issue:`1547`.

* Add a markdown file documenting the current and former core-developer team.
 By :user:`Joe Hamman <jhamman>` :issue:`1628`.

* Add Norman Rzepka to core-dev team.
 By :user:`Joe Hamman <jhamman>` :issue:`1630`.

* Added section about accessing zip files that are on s3.
 By :user:`Jeff Peck <jeffpeck10x>` :issue:`1613`.

* Add V3 roadmap and design document.
 By :user:`Joe Hamman <jhamman>` :issue:`1583`.

Maintenance
~~~~~~~~~~~

Expand DownExpand Up@@ -75,6 +95,26 @@ Maintenance
* Remove ``sphinx-rtd-theme`` dependency from ``pyproject.toml``.
 By :user:`Sanket Verma <MSanKeys963>` :issue:`1563`.

* Remove ``CODE_OF_CONDUCT.md`` file from the Zarr-Python repository.
 By :user:`Sanket Verma <MSanKeys963>` :issue:`1572`.

* Bump version of black in pre-commit.
 By :user:`David Stansby <dtstansby>` :issue:`1559`.

* Use list comprehension where applicable.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1555`.

* Use format specification mini-language to format string.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1558`.

* Single startswith() call instead of multiple ones.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1556`.

* Move codespell options around.
 By :user:`Dimitri Papadopoulos Orfanos <DimitriPapadopoulos>` :issue:`1196`.

* Remove unused mypy ignore comments.
 By :user:`David Stansby <dtstansby>` :issue:`1602`.

.. _release_2.16.1:

Expand Down

2 changes: 1 addition & 1 deletion
requirements_dev_optional.txt

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -20,4 +20,4 @@ pytest-timeout==2.2.0
h5py==3.10.0
fsspec==2023.12.2
s3fs==2023.12.2
moto[server]>=4.0.8
moto[server]>=5.0.1

28 changes: 20 additions & 8 deletions
zarr/tests/test_core.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -73,7 +73,15 @@
)
from zarr.tests.test_storage_v3 import DummyStorageTransfomer
from zarr.util import buffer_size
from zarr.tests.util import abs_container, skip_test_env_var, have_fsspec, mktemp
from zarr.tests.util import (
 abs_container,
 have_bsddb3,
 have_fsspec,
 have_lmdb,
 have_sqlite3,
 mktemp,
 skip_test_env_var,
)
from zarr.types import DIMENSION_SEPARATOR

# noinspection PyMethodMayBeStatic
Expand DownExpand Up@@ -2038,9 +2046,11 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_bsddb3 is False, reason="needs bsddb3")
class TestArrayWithDBMStoreBerkeleyDB(TestArray):
 def create_store(self):
 bsddb3 = pytest.importorskip("bsddb3")
 import bsddb3

 path = mktemp(suffix=".dbm")
 atexit.register(os.remove, path)
 store = DBMStore(path, flag="n", open=bsddb3.btopen)
Expand All@@ -2050,9 +2060,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStore(TestArray):
 def create_store(self):
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStore(path, buffers=True)
Expand All@@ -2065,9 +2075,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStoreNoBuffers(TestArray):
 def create_store(self):
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStore(path, buffers=False)
Expand All@@ -2077,9 +2087,9 @@ def test_nbytes_stored(self):
 pass # not implemented


@pytest.mark.skipif(have_sqlite3 is False, reason="needs sqlite3")
class TestArrayWithSQLiteStore(TestArray):
 def create_store(self):
 pytest.importorskip("sqlite3")
 path = mktemp(suffix=".db")
 atexit.register(atexit_rmtree, path)
 store = SQLiteStore(path)
Expand DownExpand Up@@ -2758,9 +2768,11 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_bsddb3 is False, reason="needs bsddb3")
class TestArrayWithDBMStoreV3BerkeleyDB(TestArrayV3):
 def create_store(self) -> DBMStoreV3:
 bsddb3 = pytest.importorskip("bsddb3")
 import bsddb3

 path = mktemp(suffix=".dbm")
 atexit.register(os.remove, path)
 store = DBMStoreV3(path, flag="n", open=bsddb3.btopen)
Expand All@@ -2771,11 +2783,11 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_lmdb is False, reason="needs lmdb")
class TestArrayWithLMDBStoreV3(TestArrayV3):
 lmdb_buffers = True

 def create_store(self) -> LMDBStoreV3:
 pytest.importorskip("lmdb")
 path = mktemp(suffix=".lmdb")
 atexit.register(atexit_rmtree, path)
 store = LMDBStoreV3(path, buffers=self.lmdb_buffers)
Expand All@@ -2797,9 +2809,9 @@ def test_nbytes_stored(self):


@pytest.mark.skipif(not v3_api_available, reason="V3 is disabled")
@pytest.mark.skipif(have_sqlite3 is False, reason="needs sqlite3")
class TestArrayWithSQLiteStoreV3(TestArrayV3):
 def create_store(self):
 pytest.importorskip("sqlite3")
 path = mktemp(suffix=".db")
 atexit.register(atexit_rmtree, path)
 store = SQLiteStoreV3(path)
Expand Down

2 changes: 1 addition & 1 deletion
zarr/tests/test_storage.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -1396,7 +1396,7 @@ def s3(request):
 port = 5555
 endpoint_uri = "http://127.0.0.1:%d/" % port
 proc = subprocess.Popen(
 shlex.split("moto_server s3 -p %d" % port),
 shlex.split("moto_server -p %d" % port),
 stderr=subprocess.DEVNULL,
 stdout=subprocess.DEVNULL,
 )
Expand Down

24 changes: 24 additions & 0 deletions
zarr/tests/util.py

View file


Open in desktop

Original file line numberDiff line numberDiff line change
Expand Up@@ -69,6 +69,30 @@ def skip_test_env_var(name):
 have_fsspec = False


try:
 import bsddb3 # noqa: F401

 have_bsddb3 = True
except ImportError: # pragma: no cover
 have_bsddb3 = False


try:
 import lmdb # noqa: F401

 have_lmdb = True
except ImportError: # pragma: no cover
 have_lmdb = False


try:
 import sqlite3 # noqa: F401

 have_sqlite3 = True
except ImportError: # pragma: no cover
 have_sqlite3 = False


def abs_container():
 from azure.core.exceptions import ResourceExistsError
 import azure.storage.blob as asb
Expand Down