[v3] h5py compat methods on Group - #2128

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jhamman merged 11 commits into
zarr-developers:v3from
jhamman:feature/h5py-compat-group
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Merged

[v3] h5py compat methods on Group#2128
jhamman merged 11 commits into
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jhamman:feature/h5py-compat-group

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This PR adds the h5py compat methods to the Zarr Group API from v2.

The plan described in #1583 was to remove these but after looking into it, a bit more, I came to the conclusion that require_group and require_dataset are actually pretty useful. I'm open to adding deprecation warnings to create_dataset and require_dataset (perhaps replacing the latter with require_array) if we want to phase out the h5py specific language.

closes#1597

TODO:

  • Add unit tests and/or doctests in docstrings
  • Add docstrings and API docs for any new/modified user-facing classes and functions
  • New/modified features documented in docs/tutorial.rst
  • Changes documented in docs/release.rst
  • GitHub Actions have all passed
  • Test coverage is 100% (Codecov passes)

@jhamman
jhamman marked this pull request as ready for review August 28, 2024 00:04
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jhamman requested a review from d-v-bAugust 30, 2024 18:48
@joshmoore

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In general, big 👍 for the compatibility. cc: @clbarnes of https://github.com/clbarnes/h5py_like fame in case there are any lessons learned, etc. that we should take into account.

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I'm open to adding deprecation warnings to create_dataset and require_dataset (perhaps replacing the latter with require_array) if we want to phase out the h5py specific language.

+1 to this, ultimately we shouldn't use the term "dataset". But for short-term hdf5 compatibility this PR looks good.

@d-v-bd-v-b mentioned this pull request Sep 3, 2024
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In general, big 👍 for the compatibility. cc: @clbarnes of https://github.com/clbarnes/h5py_like fame in case there are any lessons learned, etc. that we should take into account.

I'm going to go ahead and merge this but happy to take feedback from @clbarnes here or in #1597.

@clbarnes

clbarnes commented Sep 4, 2024

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Nothing specific to say, just happy if h5py_like was of any use! Definitely agree on throwing PendingDeprecationWarnings whenever these short-term compatibility measures are used, otherwise you'll never be rid of them.

@jhamman
jhamman merged commit 3b793c1 into zarr-developers:v3Sep 4, 2024
@jhamman
jhamman deleted the feature/h5py-compat-group branch September 4, 2024 23:13
@jhammanjhamman added the V3 label Sep 5, 2024
@jhammanjhamman added this to the 3.0.0 milestone Sep 5, 2024
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[v3] h5py compat methods on Group - #2128
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jhamman merged 11 commits into
zarr-developers:v3from 
jhamman:feature/h5py-compat-group
Sep 4, 2024
Merged
[v3] h5py compat methods on Group#2128
jhamman merged 11 commits into
zarr-developers:v3from 
jhamman:feature/h5py-compat-group
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This PR adds the h5py compat methods to the Zarr Group API from v2.
The plan described in #1583 was to remove these but after looking into it, a bit more, I came to the conclusion that require_group and require_dataset are actually pretty useful. I'm open to adding deprecation warnings to create_dataset and require_dataset (perhaps replacing the latter with require_array) if we want to phase out the h5py specific language.
closes#1597
TODO:
  •  Add unit tests and/or doctests in docstrings
  •  Add docstrings and API docs for any new/modified user-facing classes and functions
  •  New/modified features documented in docs/tutorial.rst
  •  Changes documented in docs/release.rst
  •  GitHub Actions have all passed
  •  Test coverage is 100% (Codecov passes)
@jhamman
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In general, big 👍 for the compatibility. cc: @clbarnes of https://github.com/clbarnes/h5py_like fame in case there are any lessons learned, etc. that we should take into account.
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I'm open to adding deprecation warnings to create_dataset and require_dataset (perhaps replacing the latter with require_array) if we want to phase out the h5py specific language.
+1 to this, ultimately we shouldn't use the term "dataset". But for short-term hdf5 compatibility this PR looks good.
@d-v-bd-v-b
mentioned this pull request
Sep 3, 2024
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In general, big 👍 for the compatibility. cc: @clbarnes of https://github.com/clbarnes/h5py_like fame in case there are any lessons learned, etc. that we should take into account.
I'm going to go ahead and merge this but happy to take feedback from @clbarnes here or in #1597.
@clbarnes
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Nothing specific to say, just happy if h5py_like was of any use! Definitely agree on throwing PendingDeprecationWarnings whenever these short-term compatibility measures are used, otherwise you'll never be rid of them.
@jhamman
jhamman
merged commit 3b793c1
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@jhammanjhamman
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[v3] h5py compat methods on Group - #2128
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jhamman merged 11 commits into
zarr-developers:v3from 
jhamman:feature/h5py-compat-group
Sep 4, 2024
Merged
[v3] h5py compat methods on Group#2128
jhamman merged 11 commits into
zarr-developers:v3from 
jhamman:feature/h5py-compat-group
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Aug 27, 2024•

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This PR adds the h5py compat methods to the Zarr Group API from v2.
The plan described in #1583 was to remove these but after looking into it, a bit more, I came to the conclusion that require_group and require_dataset are actually pretty useful. I'm open to adding deprecation warnings to create_dataset and require_dataset (perhaps replacing the latter with require_array) if we want to phase out the h5py specific language.
closes#1597
TODO:
  •  Add unit tests and/or doctests in docstrings
  •  Add docstrings and API docs for any new/modified user-facing classes and functions
  •  New/modified features documented in docs/tutorial.rst
  •  Changes documented in docs/release.rst
  •  GitHub Actions have all passed
  •  Test coverage is 100% (Codecov passes)
@jhamman
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marked this pull request as ready for review
August 28, 2024 00:04
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from d-v-bAugust 30, 2024 18:48
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In general, big 👍 for the compatibility. cc: @clbarnes of https://github.com/clbarnes/h5py_like fame in case there are any lessons learned, etc. that we should take into account.
d-v-b
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I'm open to adding deprecation warnings to create_dataset and require_dataset (perhaps replacing the latter with require_array) if we want to phase out the h5py specific language.
+1 to this, ultimately we shouldn't use the term "dataset". But for short-term hdf5 compatibility this PR looks good.
@d-v-bd-v-b
mentioned this pull request
Sep 3, 2024
 Merged

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@jhamman
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In general, big 👍 for the compatibility. cc: @clbarnes of https://github.com/clbarnes/h5py_like fame in case there are any lessons learned, etc. that we should take into account.
I'm going to go ahead and merge this but happy to take feedback from @clbarnes here or in #1597.
@clbarnes
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Nothing specific to say, just happy if h5py_like was of any use! Definitely agree on throwing PendingDeprecationWarnings whenever these short-term compatibility measures are used, otherwise you'll never be rid of them.
@jhamman
jhamman
merged commit 3b793c1
into
zarr-developers:v3Sep 4, 2024
@jhamman
jhamman
deleted the

feature/h5py-compat-group

branch
September 4, 2024 23:13
@jhammanjhamman
added
the 
V3

label
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@jhammanjhamman
added this to the 3.0.0 milestone
Sep 5, 2024
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try {
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[v3] h5py compat methods on Group - #2128
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jhamman merged 11 commits into
zarr-developers:v3from 
jhamman:feature/h5py-compat-group
Sep 4, 2024
Merged
[v3] h5py compat methods on Group#2128
jhamman merged 11 commits into
zarr-developers:v3from 
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This PR adds the h5py compat methods to the Zarr Group API from v2.
The plan described in #1583 was to remove these but after looking into it, a bit more, I came to the conclusion that require_group and require_dataset are actually pretty useful. I'm open to adding deprecation warnings to create_dataset and require_dataset (perhaps replacing the latter with require_array) if we want to phase out the h5py specific language.
closes#1597
TODO:
  •  Add unit tests and/or doctests in docstrings
  •  Add docstrings and API docs for any new/modified user-facing classes and functions
  •  New/modified features documented in docs/tutorial.rst
  •  Changes documented in docs/release.rst
  •  GitHub Actions have all passed
  •  Test coverage is 100% (Codecov passes)
@jhamman
jhamman
marked this pull request as ready for review
August 28, 2024 00:04
@jhamman
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from d-v-bAugust 30, 2024 18:48
@joshmoore
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In general, big 👍 for the compatibility. cc: @clbarnes of https://github.com/clbarnes/h5py_like fame in case there are any lessons learned, etc. that we should take into account.
d-v-b
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I'm open to adding deprecation warnings to create_dataset and require_dataset (perhaps replacing the latter with require_array) if we want to phase out the h5py specific language.
+1 to this, ultimately we shouldn't use the term "dataset". But for short-term hdf5 compatibility this PR looks good.
@d-v-bd-v-b
mentioned this pull request
Sep 3, 2024
 Merged

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@jhamman
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In general, big 👍 for the compatibility. cc: @clbarnes of https://github.com/clbarnes/h5py_like fame in case there are any lessons learned, etc. that we should take into account.
I'm going to go ahead and merge this but happy to take feedback from @clbarnes here or in #1597.
@clbarnes
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Nothing specific to say, just happy if h5py_like was of any use! Definitely agree on throwing PendingDeprecationWarnings whenever these short-term compatibility measures are used, otherwise you'll never be rid of them.
@jhamman
jhamman
merged commit 3b793c1
into
zarr-developers:v3Sep 4, 2024
@jhamman
jhamman
deleted the

feature/h5py-compat-group

branch
September 4, 2024 23:13
@jhammanjhamman
added
the 
V3

label
Sep 5, 2024
@jhammanjhamman
added this to the 3.0.0 milestone
Sep 5, 2024
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(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

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[v3] h5py compat methods on Group - #2128
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jhamman merged 11 commits into
zarr-developers:v3from 
jhamman:feature/h5py-compat-group
Sep 4, 2024
Merged
[v3] h5py compat methods on Group#2128
jhamman merged 11 commits into
zarr-developers:v3from 
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This PR adds the h5py compat methods to the Zarr Group API from v2.
The plan described in #1583 was to remove these but after looking into it, a bit more, I came to the conclusion that require_group and require_dataset are actually pretty useful. I'm open to adding deprecation warnings to create_dataset and require_dataset (perhaps replacing the latter with require_array) if we want to phase out the h5py specific language.
closes#1597
TODO:
  •  Add unit tests and/or doctests in docstrings
  •  Add docstrings and API docs for any new/modified user-facing classes and functions
  •  New/modified features documented in docs/tutorial.rst
  •  Changes documented in docs/release.rst
  •  GitHub Actions have all passed
  •  Test coverage is 100% (Codecov passes)
@jhamman
jhamman
marked this pull request as ready for review
August 28, 2024 00:04
@jhamman
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from d-v-bAugust 30, 2024 18:48
@joshmoore
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In general, big 👍 for the compatibility. cc: @clbarnes of https://github.com/clbarnes/h5py_like fame in case there are any lessons learned, etc. that we should take into account.
d-v-b
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I'm open to adding deprecation warnings to create_dataset and require_dataset (perhaps replacing the latter with require_array) if we want to phase out the h5py specific language.
+1 to this, ultimately we shouldn't use the term "dataset". But for short-term hdf5 compatibility this PR looks good.
@d-v-bd-v-b
mentioned this pull request
Sep 3, 2024
 Merged

6 tasks
@jhamman
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Sep 4, 2024

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In general, big 👍 for the compatibility. cc: @clbarnes of https://github.com/clbarnes/h5py_like fame in case there are any lessons learned, etc. that we should take into account.
I'm going to go ahead and merge this but happy to take feedback from @clbarnes here or in #1597.
@clbarnes
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Sep 4, 2024

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Nothing specific to say, just happy if h5py_like was of any use! Definitely agree on throwing PendingDeprecationWarnings whenever these short-term compatibility measures are used, otherwise you'll never be rid of them.
@jhamman
jhamman
merged commit 3b793c1
into
zarr-developers:v3Sep 4, 2024
@jhamman
jhamman
deleted the

feature/h5py-compat-group

branch
September 4, 2024 23:13
@jhammanjhamman
added
the 
V3

label
Sep 5, 2024
@jhammanjhamman
added this to the 3.0.0 milestone
Sep 5, 2024
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Auto-enable theater mode on YouTube
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try {
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[v3] h5py compat methods on Group - #2128
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jhamman merged 11 commits into
zarr-developers:v3from 
jhamman:feature/h5py-compat-group
Sep 4, 2024
Merged
[v3] h5py compat methods on Group#2128
jhamman merged 11 commits into
zarr-developers:v3from 
jhamman:feature/h5py-compat-group
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This PR adds the h5py compat methods to the Zarr Group API from v2.
The plan described in #1583 was to remove these but after looking into it, a bit more, I came to the conclusion that require_group and require_dataset are actually pretty useful. I'm open to adding deprecation warnings to create_dataset and require_dataset (perhaps replacing the latter with require_array) if we want to phase out the h5py specific language.
closes#1597
TODO:
  •  Add unit tests and/or doctests in docstrings
  •  Add docstrings and API docs for any new/modified user-facing classes and functions
  •  New/modified features documented in docs/tutorial.rst
  •  Changes documented in docs/release.rst
  •  GitHub Actions have all passed
  •  Test coverage is 100% (Codecov passes)
@jhamman
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marked this pull request as ready for review
August 28, 2024 00:04
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from d-v-bAugust 30, 2024 18:48
@joshmoore
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In general, big 👍 for the compatibility. cc: @clbarnes of https://github.com/clbarnes/h5py_like fame in case there are any lessons learned, etc. that we should take into account.
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I'm open to adding deprecation warnings to create_dataset and require_dataset (perhaps replacing the latter with require_array) if we want to phase out the h5py specific language.
+1 to this, ultimately we shouldn't use the term "dataset". But for short-term hdf5 compatibility this PR looks good.
@d-v-bd-v-b
mentioned this pull request
Sep 3, 2024
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In general, big 👍 for the compatibility. cc: @clbarnes of https://github.com/clbarnes/h5py_like fame in case there are any lessons learned, etc. that we should take into account.
I'm going to go ahead and merge this but happy to take feedback from @clbarnes here or in #1597.
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Nothing specific to say, just happy if h5py_like was of any use! Definitely agree on throwing PendingDeprecationWarnings whenever these short-term compatibility measures are used, otherwise you'll never be rid of them.
@jhamman
jhamman
merged commit 3b793c1
into
zarr-developers:v3Sep 4, 2024
@jhamman
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deleted the

feature/h5py-compat-group

branch
September 4, 2024 23:13
@jhammanjhamman
added
the 
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added this to the 3.0.0 milestone
Sep 5, 2024
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try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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[v3] h5py compat methods on Group - #2128
Merged
jhamman merged 11 commits into
zarr-developers:v3from 
jhamman:feature/h5py-compat-group
Sep 4, 2024
Merged
[v3] h5py compat methods on Group#2128
jhamman merged 11 commits into
zarr-developers:v3from 
jhamman:feature/h5py-compat-group
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@jhamman
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commented
Aug 27, 2024•

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This PR adds the h5py compat methods to the Zarr Group API from v2.
The plan described in #1583 was to remove these but after looking into it, a bit more, I came to the conclusion that require_group and require_dataset are actually pretty useful. I'm open to adding deprecation warnings to create_dataset and require_dataset (perhaps replacing the latter with require_array) if we want to phase out the h5py specific language.
closes#1597
TODO:
  •  Add unit tests and/or doctests in docstrings
  •  Add docstrings and API docs for any new/modified user-facing classes and functions
  •  New/modified features documented in docs/tutorial.rst
  •  Changes documented in docs/release.rst
  •  GitHub Actions have all passed
  •  Test coverage is 100% (Codecov passes)
@jhamman
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marked this pull request as ready for review
August 28, 2024 00:04
@jhamman
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requested a review
from d-v-bAugust 30, 2024 18:48
@joshmoore
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In general, big 👍 for the compatibility. cc: @clbarnes of https://github.com/clbarnes/h5py_like fame in case there are any lessons learned, etc. that we should take into account.
d-v-b
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I'm open to adding deprecation warnings to create_dataset and require_dataset (perhaps replacing the latter with require_array) if we want to phase out the h5py specific language.
+1 to this, ultimately we shouldn't use the term "dataset". But for short-term hdf5 compatibility this PR looks good.
@d-v-bd-v-b
mentioned this pull request
Sep 3, 2024
 Merged

6 tasks
@jhamman
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Sep 4, 2024

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In general, big 👍 for the compatibility. cc: @clbarnes of https://github.com/clbarnes/h5py_like fame in case there are any lessons learned, etc. that we should take into account.
I'm going to go ahead and merge this but happy to take feedback from @clbarnes here or in #1597.
@clbarnes
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Sep 4, 2024

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Nothing specific to say, just happy if h5py_like was of any use! Definitely agree on throwing PendingDeprecationWarnings whenever these short-term compatibility measures are used, otherwise you'll never be rid of them.
@jhamman
jhamman
merged commit 3b793c1
into
zarr-developers:v3Sep 4, 2024
@jhamman
jhamman
deleted the

feature/h5py-compat-group

branch
September 4, 2024 23:13
@jhammanjhamman
added
the 
V3

label
Sep 5, 2024
@jhammanjhamman
added this to the 3.0.0 milestone
Sep 5, 2024
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@jhamman@joshmoore@clbarnes@d-v-b

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Skip to content
[v3] h5py compat methods on Group - #2128
Merged
jhamman merged 11 commits into
zarr-developers:v3from 
jhamman:feature/h5py-compat-group
Sep 4, 2024
Merged
[v3] h5py compat methods on Group#2128
jhamman merged 11 commits into
zarr-developers:v3from 
jhamman:feature/h5py-compat-group
Conversation
@jhamman
@jhammanjhamman
commented
Aug 27, 2024•

edited

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This PR adds the h5py compat methods to the Zarr Group API from v2.
The plan described in #1583 was to remove these but after looking into it, a bit more, I came to the conclusion that require_group and require_dataset are actually pretty useful. I'm open to adding deprecation warnings to create_dataset and require_dataset (perhaps replacing the latter with require_array) if we want to phase out the h5py specific language.
closes#1597
TODO:
  •  Add unit tests and/or doctests in docstrings
  •  Add docstrings and API docs for any new/modified user-facing classes and functions
  •  New/modified features documented in docs/tutorial.rst
  •  Changes documented in docs/release.rst
  •  GitHub Actions have all passed
  •  Test coverage is 100% (Codecov passes)
@jhamman
jhamman
marked this pull request as ready for review
August 28, 2024 00:04
@jhamman
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requested a review
from d-v-bAugust 30, 2024 18:48
@joshmoore
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Sep 2, 2024

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In general, big 👍 for the compatibility. cc: @clbarnes of https://github.com/clbarnes/h5py_like fame in case there are any lessons learned, etc. that we should take into account.
d-v-b
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I'm open to adding deprecation warnings to create_dataset and require_dataset (perhaps replacing the latter with require_array) if we want to phase out the h5py specific language.
+1 to this, ultimately we shouldn't use the term "dataset". But for short-term hdf5 compatibility this PR looks good.
@d-v-bd-v-b
mentioned this pull request
Sep 3, 2024
 Merged

6 tasks
@jhamman
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Sep 4, 2024

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In general, big 👍 for the compatibility. cc: @clbarnes of https://github.com/clbarnes/h5py_like fame in case there are any lessons learned, etc. that we should take into account.
I'm going to go ahead and merge this but happy to take feedback from @clbarnes here or in #1597.
@clbarnes
clbarnes
commented
Sep 4, 2024

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Nothing specific to say, just happy if h5py_like was of any use! Definitely agree on throwing PendingDeprecationWarnings whenever these short-term compatibility measures are used, otherwise you'll never be rid of them.
@jhamman
jhamman
merged commit 3b793c1
into
zarr-developers:v3Sep 4, 2024
@jhamman
jhamman
deleted the

feature/h5py-compat-group

branch
September 4, 2024 23:13
@jhammanjhamman
added
the 
V3

label
Sep 5, 2024
@jhammanjhamman
added this to the 3.0.0 milestone
Sep 5, 2024
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h5py compatibility in v3 

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@jhamman@joshmoore@clbarnes@d-v-b