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V3 main sync w/ merge - #2335

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jhamman merged 132 commits into
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jhamman:v3-main-sync-merge
Oct 11, 2024
Merged

V3 main sync w/ merge#2335
jhamman merged 132 commits into
zarr-developers:v3from
jhamman:v3-main-sync-merge

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@jhamman

@jhammanjhamman commented Oct 11, 2024

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This was not as bad as I thought it would be:

git checkout v3
git merge upstream/main
... # resolve conflicts
git commit

Supersedes #2330
Toward #2308

dependabotBotand others added 30 commits December 4, 2023 09:13
@dependabot
Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (zarr-develope…
ea90564
…rs#1586)
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.8.10...v1.8.11)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
...
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@dependabot
Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 (zarr-develo…
79e80b3
…pers#1587)
Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2.3.0 to 3.0.1.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](conda-incubator/setup-miniconda@v2.3.0...v3.0.1)
---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
dependency-type: direct:production
update-type: version-update:semver-major
...
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@janickm
* Cache result of FSStore._fsspec_installed (zarr-developers#1581)
25dbeed
Prevent runtime-overhead in doing this check multiple times
@dstansby
Bump version of black in pre-commit (zarr-developers#1559)
8579e21
@DimitriPapadopoulos@d-v-b
Use list comprehension where applicable (zarr-developers#1555)
54e31e9
Even if this is only a test, list comprehensions are faster than
repeatedly call append().
Also use tuple instead of list when possible.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dependabot@jhamman
Bump numcodecs from 0.11.0 to 0.12.1 (zarr-developers#1580)
7d2c9bf
Bumps [numcodecs](https://github.com/zarr-developers/numcodecs) from 0.11.0 to 0.12.1.
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.11.0...v0.12.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-minor
...
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Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos@jhamman
Use format specification mini-language to format string (zarr-develop…
10dee6b
…ers#1558)
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos@d-v-b@jhamman
Single startswith() call instead of multiple ones (zarr-developers#1556)
40a6e81
It's faster and probably more readable.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@dependabot@jhamman
Bump pymongo from 4.5.0 to 4.6.1 (zarr-developers#1585)
5954ff9
Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.5.0 to 4.6.1.
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.5.0...4.6.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
...
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@DimitriPapadopoulos
Move codespell options around (zarr-developers#1196)
6ad7b0e
Starting with codespell 2.2.2, options can be specified in
`pyrpoject.toml` in addition to `setup.cfg`:
https://github.com/codespell-project/codespell#using-a-config-file
Specifying options in a config file instead of command line options in
`.pre-commit-config.yaml` ensures codespell uses the same options when
run as pre-commit hook or from the command line in the repository root
directory.
@dependabot@joshmoore
Bump fsspec from 2023.10.0 to 2023.12.1 (zarr-developers#1600)
cf32382
* Bump fsspec from 2023.10.0 to 2023.12.1
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.10.0 to 2023.12.1.
- [Commits](fsspec/filesystem_spec@2023.10.0...2023.12.1)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update s3fs as well
* Fix s3fs
---------
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@dstansby@d-v-b
Add type hints to zarr.create (zarr-developers#1536)
4d79cfc
* Add type hints to zarr.create
* Use protocol for MetaArray
* Use protocol for Synchronizer
* Fix Path typing
* Add release note
* Fix dim separator typing
* Ignore ... in coverage reporting
* Fix chunk typing
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dstansby@d-v-b
Remove unused mypy ignore comments (zarr-developers#1602)
12abd4e
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dependabot@jhamman
Bump actions/setup-python from 4.7.1 to 5.0.0 (zarr-developers#1605)
c2f5f00
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.1 to 5.0.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v4.7.1...v5.0.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-major
...
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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@dependabot
Bump github/codeql-action from 2 to 3 (zarr-developers#1609)
490e0fe
Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3.
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](github/codeql-action@v2...v3)
---
updated-dependencies:
- dependency-name: github/codeql-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@pre-commit-ci@joshmoore
chore: update pre-commit hooks (zarr-developers#1448)
b5f79dd
* chore: update pre-commit hooks
updates:
- https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit
- [github.com/astral-sh/ruff-pre-commit: v0.0.224 → v0.1.8](astral-sh/ruff-pre-commit@v0.0.224...v0.1.8)
- [github.com/psf/black: 23.10.1 → 23.12.0](psf/black@23.10.1...23.12.0)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](codespell-project/codespell@v2.2.5...v2.2.6)
- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0)
- [github.com/pre-commit/mirrors-mypy: v1.3.0 → v1.7.1](pre-commit/mirrors-mypy@v1.3.0...v1.7.1)
* Attempt to fix ruff
* Use isinstance
---------
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1618)
e09ee14
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](astral-sh/ruff-pre-commit@v0.1.8...v0.1.9)
- [github.com/psf/black: 23.12.0 → 23.12.1](psf/black@23.12.0...23.12.1)
- [github.com/pre-commit/mirrors-mypy: v1.7.1 → v1.8.0](pre-commit/mirrors-mypy@v1.7.1...v1.8.0)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot@jhamman
Bump fsspec from 2023.12.1 to 2023.12.2 (zarr-developers#1606)
cd13989
* Bump fsspec from 2023.12.1 to 2023.12.2
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.12.1 to 2023.12.2.
- [Commits](fsspec/filesystem_spec@2023.12.1...2023.12.2)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update requirements_dev_optional.txt
---------
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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@dependabot
Bump pytest-doctestplus from 1.0.0 to 1.1.0 (zarr-developers#1619)
5fb420f
Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.0.0 to 1.1.0.
- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)
- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)
- [Commits](scientific-python/pytest-doctestplus@v1.0.0...v1.1.0)
---
updated-dependencies:
- dependency-name: pytest-doctestplus
dependency-type: direct:development
update-type: version-update:semver-minor
...
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@dependabot
Bump pytest from 7.4.3 to 7.4.4 (zarr-developers#1622)
435a7ca
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1626)
6961fa9
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](astral-sh/ruff-pre-commit@v0.1.9...v0.1.11)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@jhamman
Create TEAM.md (zarr-developers#1628)
ee51835
@joshmoore@jhamman@jakirkham
Drop python 3.8 and numpy 1.20 (zarr-developers#1557)
c7d66b4
* Drop 3.8 and add 3.12
* Try removing line_profiler
* Also bump the minimal numpy to 1.21
* Drop 3.12 again
* Revert "Try removing line_profiler"
This reverts commit 837854b.
* Update release.rst
---------
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: jakirkham <jakirkham@gmail.com>
@jhamman
Add Norman Rzepka to core-dev team (zarr-developers#1630)
6ad464b
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1633)
a292dc4
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](astral-sh/ruff-pre-commit@v0.1.11...v0.1.13)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot@jhamman@joshmoore
Bump actions/download-artifact from 3 to 4 (zarr-developers#1611)
68c87bb
* Bump actions/download-artifact from 3 to 4
Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](actions/download-artifact@v3...v4)
---
updated-dependencies:
- dependency-name: actions/download-artifact
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
* Also bump upload-artifact
see https://github.com/actions/download-artifact?tab=readme-ov-file#breaking-changes
> Downloading artifacts that were created from action/upload-artifact@v3 and below are not supported.
---------
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@jeffpeck10x@d-v-b@joshmoore
Update tutorial.rst to include section about accessing Zip Files on S3 (
1d56da0
zarr-developers#1615)
* Update tutorial.rst to include section about accessing Zip Files on S3
Per discussion here, add information about about accessing zip files on s3:
zarr-developers#1613
* Update release.rst
* Implement d-v-b's suggestions
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@jhamman@normanrz@sanketverma1704
doc(v3): add v3 roadmap and design document (zarr-developers#1583)
8ac8553
* doc(v3): add v3 roadmap and design document
* Update v3-roadmap-and-design.md
* updates after latest round of reviews
* Update v3-roadmap-and-design.md
Co-authored-by: Norman Rzepka <code@normanrz.com>
* Update v3-roadmap-and-design.md
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
---------
Co-authored-by: Norman Rzepka <code@normanrz.com>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1636)
a81db07
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](astral-sh/ruff-pre-commit@v0.1.13...v0.1.14)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@hoodmane@oeway
Fix zarr sync (zarr-developers#1663)
4f2ace4
This patch removes fasteners and disables zarr.sync which uses process and thread
Co-authored-by: Wei Ouyang <oeway007@gmail.com>
dependabotBotand others added 19 commits August 27, 2024 17:37
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
9e0b5e8
…evelopers#2129)
Bumps the requirements group with 3 updates in the / directory: [numpy](https://github.com/numpy/numpy), [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) and [azure-storage-blob](https://github.com/Azure/azure-sdk-for-python).
Updates `numpy` from 2.0.1 to 2.1.0
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.0.1...v2.1.0)
Updates `ipywidgets` from 8.1.3 to 8.1.5
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](jupyter-widgets/ipywidgets@8.1.3...8.1.5)
Updates `azure-storage-blob` from 12.16.0 to 12.21.0
- [Release notes](https://github.com/Azure/azure-sdk-for-python/releases)
- [Changelog](https://github.com/Azure/azure-sdk-for-python/blob/main/doc/esrp_release.md)
- [Commits](Azure/azure-sdk-for-python@azure-storage-blob_12.16.0...azure-storage-blob_12.21.0)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: ipywidgets
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: azure-storage-blob
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
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@jhamman
chore: bump minimum numpy version to 1.24 (zarr-developers#2127)
cc2cdee
* chore: bump minimum version to 1.24
* Update .github/workflows/python-package.yml
@dstansby
Remove un-needed package installs in CI (zarr-developers#2095)
cb2c669
@dependabot
Bump the actions group with 2 updates (zarr-developers#2146)
6656d1a
Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `actions/setup-python` from 5.1.1 to 5.2.0
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v5.1.1...v5.2.0)
Updates `pypa/gh-action-pypi-publish` from 1.9.0 to 1.10.0
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.9.0...v1.10.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
...
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump numpy from 2.1.0 to 2.1.1 in the requirements group (zarr-develo…
f1978dd
…pers#2151)
Bumps the requirements group with 1 update: [numpy](https://github.com/numpy/numpy).
Updates `numpy` from 2.1.0 to 2.1.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.0...v2.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@jhamman
chore(docs): update release notes ahead of 2.18.4 (zarr-developers#2152)
88b2100
@dependabot
Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions…
aa9da2b
… group (zarr-developers#2161)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.0 to 1.10.1
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.0...v1.10.1)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
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@sneakers-the-rat
[docs] remove primary sidebar from tutorial (zarr-developers#2142)
774f5b1
* remove primary sidebar from tutorial
* lint
@dependabot
Bump pytest from 8.3.2 to 8.3.3 in the requirements group (zarr-devel…
e1d98cd
…opers#2172)
Bumps the requirements group with 1 update: [pytest](https://github.com/pytest-dev/pytest).
Updates `pytest` from 8.3.2 to 8.3.3
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.2...8.3.3)
---
updated-dependencies:
- dependency-name: pytest
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
a011079
…s#2220)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.1 to 1.10.2
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.1...v1.10.2)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
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@jhamman
Update TEAM.md (zarr-developers#2227)
53f600b
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
a9abbe7
…evelopers#2284)
Bumps the requirements group with 3 updates in the / directory: [redis](https://github.com/redis/redis-py), [pymongo](https://github.com/mongodb/mongo-python-driver) and [h5py](https://github.com/h5py/h5py).
Updates `redis` from 5.0.8 to 5.1.0
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.0.8...v5.1.0)
Updates `pymongo` from 4.8.0 to 4.10.0
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.8.0...4.10.0)
Updates `h5py` from 3.11.0 to 3.12.1
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](h5py/h5py@3.11.0...3.12.1)
---
updated-dependencies:
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: h5py
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump pymongo from 4.10.0 to 4.10.1 in the requirements group (zarr-de…
559c2e3
…velopers#2288)
Bumps the requirements group with 1 update: [pymongo](https://github.com/mongodb/mongo-python-driver).
Updates `pymongo` from 4.10.0 to 4.10.1
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.10.0...4.10.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dstansby
Fix low contrast box titles (zarr-developers#2287) (zarr-developers#2292
6b9ab9e
)
@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
f175de4
…s#2304)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.2 to 1.10.3
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.2...v1.10.3)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump the requirements group with 2 updates (zarr-developers#2303)
a1dfd01
Bumps the requirements group with 2 updates: [numpy](https://github.com/numpy/numpy) and [redis](https://github.com/redis/redis-py).
Updates `numpy` from 2.1.1 to 2.1.2
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.1...v2.1.2)
Updates `redis` from 5.1.0 to 5.1.1
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.1.0...v5.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@dependabot
Bump numcodecs from 0.13.0 to 0.13.1 in the requirements group (zarr-…
eaf5d7a
…developers#2326)
Bumps the requirements group with 1 update: [numcodecs](https://github.com/zarr-developers/numcodecs).
Updates `numcodecs` from 0.13.0 to 0.13.1
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.13.0...v0.13.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@jhamman
Merge branch 'main' ofhttps://github.com/zarr-developers/zarr-python…
0e52e52
…into v3-main-sync-merge
@jhamman
remove zarr.types from v2
7bcb92b
@jhammanjhamman mentioned this pull request Oct 11, 2024
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@jhammanjhamman changed the title V3 main sync w/ mergemergeV3 main sync w/ mergeOct 11, 2024
dstansby
dstansby approved these changes Oct 11, 2024
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Nice, all of these look like good updates to make!

Comment threadv3-roadmap-and-design.md

@dstansbydstansbyOct 11, 2024

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Is this still useful to have around? Or worth removing at this point? Happy either way, just asking the question :)

@jhammanjhammanOct 11, 2024

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I'd like to keep it here for now. In the future, we may evolve this to be a roadmap page in the docs.

@jhamman
jhamman merged commit ce5f53e into zarr-developers:v3Oct 11, 2024
jhamman added a commit that referenced this pull request Oct 11, 2024
@jhamman
Revert "V3 main sync w/ merge (#2335)"
50b8d89
This reverts commit ce5f53e.
jhamman added a commit that referenced this pull request Oct 11, 2024
@jhamman
Revert "V3 main sync w/ merge (#2335)" (#2339)
124640a
This reverts commit ce5f53e.
This was referenced Oct 11, 2024
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@jhamman@dstansby@janickm@DimitriPapadopoulos@joshmoore@jeffpeck10x@hoodmane@sanketverma1704@d-v-b@DahnJ@dcherian@itcarroll@rabernat@sneakers-the-rat
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V3 main sync w/ merge by jhamman · Pull Request #2335 · zarr-developers/zarr-python · GitHub
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V3 main sync w/ merge - #2335
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jhamman merged 132 commits into
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Oct 11, 2024
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V3 main sync w/ merge#2335
jhamman merged 132 commits into
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@jhamman
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This was not as bad as I thought it would be:
git checkout v3
git merge upstream/main
... # resolve conflicts
git commit

Supersedes #2330

Toward #2308
dependabotBotand others
added 30 commits
December 4, 2023 09:13
@dependabot
Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (zarr-develope…
ea90564
…rs#1586)
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.8.10...v1.8.11)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 (zarr-develo…
79e80b3
…pers#1587)
Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2.3.0 to 3.0.1.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](conda-incubator/setup-miniconda@v2.3.0...v3.0.1)
---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@janickm
* Cache result of FSStore._fsspec_installed (zarr-developers#1581)
25dbeed
Prevent runtime-overhead in doing this check multiple times
@dstansby
Bump version of black in pre-commit (zarr-developers#1559)
8579e21
@DimitriPapadopoulos@d-v-b
Use list comprehension where applicable (zarr-developers#1555)
54e31e9
Even if this is only a test, list comprehensions are faster than
repeatedly call append().
Also use tuple instead of list when possible.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dependabot@jhamman
Bump numcodecs from 0.11.0 to 0.12.1 (zarr-developers#1580)
7d2c9bf
Bumps [numcodecs](https://github.com/zarr-developers/numcodecs) from 0.11.0 to 0.12.1.
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.11.0...v0.12.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos@jhamman
Use format specification mini-language to format string (zarr-develop…
10dee6b
…ers#1558)
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos@d-v-b@jhamman
Single startswith() call instead of multiple ones (zarr-developers#1556)
40a6e81
It's faster and probably more readable.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@dependabot@jhamman
Bump pymongo from 4.5.0 to 4.6.1 (zarr-developers#1585)
5954ff9
Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.5.0 to 4.6.1.
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.5.0...4.6.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos
Move codespell options around (zarr-developers#1196)
6ad7b0e
Starting with codespell 2.2.2, options can be specified in
`pyrpoject.toml` in addition to `setup.cfg`:
https://github.com/codespell-project/codespell#using-a-config-file
Specifying options in a config file instead of command line options in
`.pre-commit-config.yaml` ensures codespell uses the same options when
run as pre-commit hook or from the command line in the repository root
directory.
@dependabot@joshmoore
Bump fsspec from 2023.10.0 to 2023.12.1 (zarr-developers#1600)
cf32382
* Bump fsspec from 2023.10.0 to 2023.12.1
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.10.0 to 2023.12.1.
- [Commits](fsspec/filesystem_spec@2023.10.0...2023.12.1)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update s3fs as well
* Fix s3fs
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@dstansby@d-v-b
Add type hints to zarr.create (zarr-developers#1536)
4d79cfc
* Add type hints to zarr.create
* Use protocol for MetaArray
* Use protocol for Synchronizer
* Fix Path typing
* Add release note
* Fix dim separator typing
* Ignore ... in coverage reporting
* Fix chunk typing
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dstansby@d-v-b
Remove unused mypy ignore comments (zarr-developers#1602)
12abd4e
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dependabot@jhamman
Bump actions/setup-python from 4.7.1 to 5.0.0 (zarr-developers#1605)
c2f5f00
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.1 to 5.0.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v4.7.1...v5.0.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@dependabot
Bump github/codeql-action from 2 to 3 (zarr-developers#1609)
490e0fe
Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3.
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](github/codeql-action@v2...v3)
---
updated-dependencies:
- dependency-name: github/codeql-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@pre-commit-ci@joshmoore
chore: update pre-commit hooks (zarr-developers#1448)
b5f79dd
* chore: update pre-commit hooks
updates:
- https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit
- [github.com/astral-sh/ruff-pre-commit: v0.0.224 → v0.1.8](astral-sh/ruff-pre-commit@v0.0.224...v0.1.8)
- [github.com/psf/black: 23.10.1 → 23.12.0](psf/black@23.10.1...23.12.0)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](codespell-project/codespell@v2.2.5...v2.2.6)
- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0)
- [github.com/pre-commit/mirrors-mypy: v1.3.0 → v1.7.1](pre-commit/mirrors-mypy@v1.3.0...v1.7.1)
* Attempt to fix ruff
* Use isinstance
---------
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1618)
e09ee14
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](astral-sh/ruff-pre-commit@v0.1.8...v0.1.9)
- [github.com/psf/black: 23.12.0 → 23.12.1](psf/black@23.12.0...23.12.1)
- [github.com/pre-commit/mirrors-mypy: v1.7.1 → v1.8.0](pre-commit/mirrors-mypy@v1.7.1...v1.8.0)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot@jhamman
Bump fsspec from 2023.12.1 to 2023.12.2 (zarr-developers#1606)
cd13989
* Bump fsspec from 2023.12.1 to 2023.12.2
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.12.1 to 2023.12.2.
- [Commits](fsspec/filesystem_spec@2023.12.1...2023.12.2)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update requirements_dev_optional.txt
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@dependabot
Bump pytest-doctestplus from 1.0.0 to 1.1.0 (zarr-developers#1619)
5fb420f
Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.0.0 to 1.1.0.
- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)
- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)
- [Commits](scientific-python/pytest-doctestplus@v1.0.0...v1.1.0)
---
updated-dependencies:
- dependency-name: pytest-doctestplus
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump pytest from 7.4.3 to 7.4.4 (zarr-developers#1622)
435a7ca
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1626)
6961fa9
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](astral-sh/ruff-pre-commit@v0.1.9...v0.1.11)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@jhamman
Create TEAM.md (zarr-developers#1628)
ee51835
@joshmoore@jhamman@jakirkham
Drop python 3.8 and numpy 1.20 (zarr-developers#1557)
c7d66b4
* Drop 3.8 and add 3.12
* Try removing line_profiler
* Also bump the minimal numpy to 1.21
* Drop 3.12 again
* Revert "Try removing line_profiler"
This reverts commit 837854b.
* Update release.rst
---------
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: jakirkham <jakirkham@gmail.com>
@jhamman
Add Norman Rzepka to core-dev team (zarr-developers#1630)
6ad464b
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1633)
a292dc4
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](astral-sh/ruff-pre-commit@v0.1.11...v0.1.13)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot@jhamman@joshmoore
Bump actions/download-artifact from 3 to 4 (zarr-developers#1611)
68c87bb
* Bump actions/download-artifact from 3 to 4
Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](actions/download-artifact@v3...v4)
---
updated-dependencies:
- dependency-name: actions/download-artifact
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
* Also bump upload-artifact
see https://github.com/actions/download-artifact?tab=readme-ov-file#breaking-changes
> Downloading artifacts that were created from action/upload-artifact@v3 and below are not supported.
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@jeffpeck10x@d-v-b@joshmoore
Update tutorial.rst to include section about accessing Zip Files on S3 (
1d56da0
zarr-developers#1615)
* Update tutorial.rst to include section about accessing Zip Files on S3
Per discussion here, add information about about accessing zip files on s3:
zarr-developers#1613
* Update release.rst
* Implement d-v-b's suggestions
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@jhamman@normanrz@sanketverma1704
doc(v3): add v3 roadmap and design document (zarr-developers#1583)
8ac8553
* doc(v3): add v3 roadmap and design document
* Update v3-roadmap-and-design.md
* updates after latest round of reviews
* Update v3-roadmap-and-design.md
Co-authored-by: Norman Rzepka <code@normanrz.com>
* Update v3-roadmap-and-design.md
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
---------
Co-authored-by: Norman Rzepka <code@normanrz.com>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1636)
a81db07
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](astral-sh/ruff-pre-commit@v0.1.13...v0.1.14)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@hoodmane@oeway
Fix zarr sync (zarr-developers#1663)
4f2ace4
This patch removes fasteners and disables zarr.sync which uses process and thread
Co-authored-by: Wei Ouyang <oeway007@gmail.com>
dependabotBotand others
added 19 commits
August 27, 2024 17:37
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
9e0b5e8
…evelopers#2129)
Bumps the requirements group with 3 updates in the / directory: [numpy](https://github.com/numpy/numpy), [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) and [azure-storage-blob](https://github.com/Azure/azure-sdk-for-python).
Updates `numpy` from 2.0.1 to 2.1.0
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.0.1...v2.1.0)
Updates `ipywidgets` from 8.1.3 to 8.1.5
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](jupyter-widgets/ipywidgets@8.1.3...8.1.5)
Updates `azure-storage-blob` from 12.16.0 to 12.21.0
- [Release notes](https://github.com/Azure/azure-sdk-for-python/releases)
- [Changelog](https://github.com/Azure/azure-sdk-for-python/blob/main/doc/esrp_release.md)
- [Commits](Azure/azure-sdk-for-python@azure-storage-blob_12.16.0...azure-storage-blob_12.21.0)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: ipywidgets
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: azure-storage-blob
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@jhamman
chore: bump minimum numpy version to 1.24 (zarr-developers#2127)
cc2cdee
* chore: bump minimum version to 1.24
* Update .github/workflows/python-package.yml
@dstansby
Remove un-needed package installs in CI (zarr-developers#2095)
cb2c669
@dependabot
Bump the actions group with 2 updates (zarr-developers#2146)
6656d1a
Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `actions/setup-python` from 5.1.1 to 5.2.0
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v5.1.1...v5.2.0)
Updates `pypa/gh-action-pypi-publish` from 1.9.0 to 1.10.0
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.9.0...v1.10.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump numpy from 2.1.0 to 2.1.1 in the requirements group (zarr-develo…
f1978dd
…pers#2151)
Bumps the requirements group with 1 update: [numpy](https://github.com/numpy/numpy).
Updates `numpy` from 2.1.0 to 2.1.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.0...v2.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@jhamman
chore(docs): update release notes ahead of 2.18.4 (zarr-developers#2152)
88b2100
@dependabot
Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions…
aa9da2b
… group (zarr-developers#2161)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.0 to 1.10.1
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.0...v1.10.1)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@sneakers-the-rat
[docs] remove primary sidebar from tutorial (zarr-developers#2142)
774f5b1
* remove primary sidebar from tutorial
* lint
@dependabot
Bump pytest from 8.3.2 to 8.3.3 in the requirements group (zarr-devel…
e1d98cd
…opers#2172)
Bumps the requirements group with 1 update: [pytest](https://github.com/pytest-dev/pytest).
Updates `pytest` from 8.3.2 to 8.3.3
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.2...8.3.3)
---
updated-dependencies:
- dependency-name: pytest
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
a011079
…s#2220)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.1 to 1.10.2
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.1...v1.10.2)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@jhamman
Update TEAM.md (zarr-developers#2227)
53f600b
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
a9abbe7
…evelopers#2284)
Bumps the requirements group with 3 updates in the / directory: [redis](https://github.com/redis/redis-py), [pymongo](https://github.com/mongodb/mongo-python-driver) and [h5py](https://github.com/h5py/h5py).
Updates `redis` from 5.0.8 to 5.1.0
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.0.8...v5.1.0)
Updates `pymongo` from 4.8.0 to 4.10.0
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.8.0...4.10.0)
Updates `h5py` from 3.11.0 to 3.12.1
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](h5py/h5py@3.11.0...3.12.1)
---
updated-dependencies:
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: h5py
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump pymongo from 4.10.0 to 4.10.1 in the requirements group (zarr-de…
559c2e3
…velopers#2288)
Bumps the requirements group with 1 update: [pymongo](https://github.com/mongodb/mongo-python-driver).
Updates `pymongo` from 4.10.0 to 4.10.1
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.10.0...4.10.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dstansby
Fix low contrast box titles (zarr-developers#2287) (zarr-developers#2292
6b9ab9e
)
@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
f175de4
…s#2304)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.2 to 1.10.3
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.2...v1.10.3)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump the requirements group with 2 updates (zarr-developers#2303)
a1dfd01
Bumps the requirements group with 2 updates: [numpy](https://github.com/numpy/numpy) and [redis](https://github.com/redis/redis-py).
Updates `numpy` from 2.1.1 to 2.1.2
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.1...v2.1.2)
Updates `redis` from 5.1.0 to 5.1.1
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.1.0...v5.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump numcodecs from 0.13.0 to 0.13.1 in the requirements group (zarr-…
eaf5d7a
…developers#2326)
Bumps the requirements group with 1 update: [numcodecs](https://github.com/zarr-developers/numcodecs).
Updates `numcodecs` from 0.13.0 to 0.13.1
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.13.0...v0.13.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@jhamman
Merge branch 'main' ofhttps://github.com/zarr-developers/zarr-python…
0e52e52
…into v3-main-sync-merge
@jhamman
remove zarr.types from v2
7bcb92b
@jhammanjhamman
mentioned this pull request
Oct 11, 2024
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V3 main sync w/ mergemergeV3 main sync w/ mergeOct 11, 2024
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Nice, all of these look like good updates to make!
Comment threadv3-roadmap-and-design.md
@dstansbydstansbyOct 11, 2024

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Is this still useful to have around? Or worth removing at this point? Happy either way, just asking the question :)
@jhammanjhammanOct 11, 2024

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I'd like to keep it here for now. In the future, we may evolve this to be a roadmap page in the docs.
@jhamman
jhamman
merged commit ce5f53e
into
zarr-developers:v3Oct 11, 2024
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that referenced
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@jhamman
Revert "V3 main sync w/ merge (#2335)"
50b8d89
This reverts commit ce5f53e.
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@jhamman
Revert "V3 main sync w/ merge (#2335)" (#2339)
124640a
This reverts commit ce5f53e.

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14 participants

@jhamman@dstansby@janickm@DimitriPapadopoulos@joshmoore@jeffpeck10x@hoodmane@sanketverma1704@d-v-b@DahnJ@dcherian@itcarroll@rabernat@sneakers-the-rat

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V3 main sync w/ merge by jhamman · Pull Request #2335 · zarr-developers/zarr-python · GitHub
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V3 main sync w/ merge - #2335
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V3 main sync w/ merge#2335
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This was not as bad as I thought it would be:
git checkout v3
git merge upstream/main
... # resolve conflicts
git commit

Supersedes #2330

Toward #2308
dependabotBotand others
added 30 commits
December 4, 2023 09:13
@dependabot
Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (zarr-develope…
ea90564
…rs#1586)
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.8.10...v1.8.11)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 (zarr-develo…
79e80b3
…pers#1587)
Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2.3.0 to 3.0.1.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](conda-incubator/setup-miniconda@v2.3.0...v3.0.1)
---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@janickm
* Cache result of FSStore._fsspec_installed (zarr-developers#1581)
25dbeed
Prevent runtime-overhead in doing this check multiple times
@dstansby
Bump version of black in pre-commit (zarr-developers#1559)
8579e21
@DimitriPapadopoulos@d-v-b
Use list comprehension where applicable (zarr-developers#1555)
54e31e9
Even if this is only a test, list comprehensions are faster than
repeatedly call append().
Also use tuple instead of list when possible.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dependabot@jhamman
Bump numcodecs from 0.11.0 to 0.12.1 (zarr-developers#1580)
7d2c9bf
Bumps [numcodecs](https://github.com/zarr-developers/numcodecs) from 0.11.0 to 0.12.1.
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.11.0...v0.12.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos@jhamman
Use format specification mini-language to format string (zarr-develop…
10dee6b
…ers#1558)
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos@d-v-b@jhamman
Single startswith() call instead of multiple ones (zarr-developers#1556)
40a6e81
It's faster and probably more readable.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@dependabot@jhamman
Bump pymongo from 4.5.0 to 4.6.1 (zarr-developers#1585)
5954ff9
Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.5.0 to 4.6.1.
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.5.0...4.6.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
...
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Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos
Move codespell options around (zarr-developers#1196)
6ad7b0e
Starting with codespell 2.2.2, options can be specified in
`pyrpoject.toml` in addition to `setup.cfg`:
https://github.com/codespell-project/codespell#using-a-config-file
Specifying options in a config file instead of command line options in
`.pre-commit-config.yaml` ensures codespell uses the same options when
run as pre-commit hook or from the command line in the repository root
directory.
@dependabot@joshmoore
Bump fsspec from 2023.10.0 to 2023.12.1 (zarr-developers#1600)
cf32382
* Bump fsspec from 2023.10.0 to 2023.12.1
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.10.0 to 2023.12.1.
- [Commits](fsspec/filesystem_spec@2023.10.0...2023.12.1)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update s3fs as well
* Fix s3fs
---------
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@dstansby@d-v-b
Add type hints to zarr.create (zarr-developers#1536)
4d79cfc
* Add type hints to zarr.create
* Use protocol for MetaArray
* Use protocol for Synchronizer
* Fix Path typing
* Add release note
* Fix dim separator typing
* Ignore ... in coverage reporting
* Fix chunk typing
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dstansby@d-v-b
Remove unused mypy ignore comments (zarr-developers#1602)
12abd4e
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dependabot@jhamman
Bump actions/setup-python from 4.7.1 to 5.0.0 (zarr-developers#1605)
c2f5f00
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.1 to 5.0.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v4.7.1...v5.0.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
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@dependabot
Bump github/codeql-action from 2 to 3 (zarr-developers#1609)
490e0fe
Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3.
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](github/codeql-action@v2...v3)
---
updated-dependencies:
- dependency-name: github/codeql-action
dependency-type: direct:production
update-type: version-update:semver-major
...
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@pre-commit-ci@joshmoore
chore: update pre-commit hooks (zarr-developers#1448)
b5f79dd
* chore: update pre-commit hooks
updates:
- https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit
- [github.com/astral-sh/ruff-pre-commit: v0.0.224 → v0.1.8](astral-sh/ruff-pre-commit@v0.0.224...v0.1.8)
- [github.com/psf/black: 23.10.1 → 23.12.0](psf/black@23.10.1...23.12.0)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](codespell-project/codespell@v2.2.5...v2.2.6)
- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0)
- [github.com/pre-commit/mirrors-mypy: v1.3.0 → v1.7.1](pre-commit/mirrors-mypy@v1.3.0...v1.7.1)
* Attempt to fix ruff
* Use isinstance
---------
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1618)
e09ee14
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](astral-sh/ruff-pre-commit@v0.1.8...v0.1.9)
- [github.com/psf/black: 23.12.0 → 23.12.1](psf/black@23.12.0...23.12.1)
- [github.com/pre-commit/mirrors-mypy: v1.7.1 → v1.8.0](pre-commit/mirrors-mypy@v1.7.1...v1.8.0)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot@jhamman
Bump fsspec from 2023.12.1 to 2023.12.2 (zarr-developers#1606)
cd13989
* Bump fsspec from 2023.12.1 to 2023.12.2
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.12.1 to 2023.12.2.
- [Commits](fsspec/filesystem_spec@2023.12.1...2023.12.2)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update requirements_dev_optional.txt
---------
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@dependabot
Bump pytest-doctestplus from 1.0.0 to 1.1.0 (zarr-developers#1619)
5fb420f
Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.0.0 to 1.1.0.
- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)
- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)
- [Commits](scientific-python/pytest-doctestplus@v1.0.0...v1.1.0)
---
updated-dependencies:
- dependency-name: pytest-doctestplus
dependency-type: direct:development
update-type: version-update:semver-minor
...
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@dependabot
Bump pytest from 7.4.3 to 7.4.4 (zarr-developers#1622)
435a7ca
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1626)
6961fa9
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](astral-sh/ruff-pre-commit@v0.1.9...v0.1.11)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@jhamman
Create TEAM.md (zarr-developers#1628)
ee51835
@joshmoore@jhamman@jakirkham
Drop python 3.8 and numpy 1.20 (zarr-developers#1557)
c7d66b4
* Drop 3.8 and add 3.12
* Try removing line_profiler
* Also bump the minimal numpy to 1.21
* Drop 3.12 again
* Revert "Try removing line_profiler"
This reverts commit 837854b.
* Update release.rst
---------
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: jakirkham <jakirkham@gmail.com>
@jhamman
Add Norman Rzepka to core-dev team (zarr-developers#1630)
6ad464b
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1633)
a292dc4
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](astral-sh/ruff-pre-commit@v0.1.11...v0.1.13)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot@jhamman@joshmoore
Bump actions/download-artifact from 3 to 4 (zarr-developers#1611)
68c87bb
* Bump actions/download-artifact from 3 to 4
Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](actions/download-artifact@v3...v4)
---
updated-dependencies:
- dependency-name: actions/download-artifact
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
* Also bump upload-artifact
see https://github.com/actions/download-artifact?tab=readme-ov-file#breaking-changes
> Downloading artifacts that were created from action/upload-artifact@v3 and below are not supported.
---------
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@jeffpeck10x@d-v-b@joshmoore
Update tutorial.rst to include section about accessing Zip Files on S3 (
1d56da0
zarr-developers#1615)
* Update tutorial.rst to include section about accessing Zip Files on S3
Per discussion here, add information about about accessing zip files on s3:
zarr-developers#1613
* Update release.rst
* Implement d-v-b's suggestions
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@jhamman@normanrz@sanketverma1704
doc(v3): add v3 roadmap and design document (zarr-developers#1583)
8ac8553
* doc(v3): add v3 roadmap and design document
* Update v3-roadmap-and-design.md
* updates after latest round of reviews
* Update v3-roadmap-and-design.md
Co-authored-by: Norman Rzepka <code@normanrz.com>
* Update v3-roadmap-and-design.md
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
---------
Co-authored-by: Norman Rzepka <code@normanrz.com>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1636)
a81db07
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](astral-sh/ruff-pre-commit@v0.1.13...v0.1.14)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@hoodmane@oeway
Fix zarr sync (zarr-developers#1663)
4f2ace4
This patch removes fasteners and disables zarr.sync which uses process and thread
Co-authored-by: Wei Ouyang <oeway007@gmail.com>
dependabotBotand others
added 19 commits
August 27, 2024 17:37
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
9e0b5e8
…evelopers#2129)
Bumps the requirements group with 3 updates in the / directory: [numpy](https://github.com/numpy/numpy), [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) and [azure-storage-blob](https://github.com/Azure/azure-sdk-for-python).
Updates `numpy` from 2.0.1 to 2.1.0
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.0.1...v2.1.0)
Updates `ipywidgets` from 8.1.3 to 8.1.5
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](jupyter-widgets/ipywidgets@8.1.3...8.1.5)
Updates `azure-storage-blob` from 12.16.0 to 12.21.0
- [Release notes](https://github.com/Azure/azure-sdk-for-python/releases)
- [Changelog](https://github.com/Azure/azure-sdk-for-python/blob/main/doc/esrp_release.md)
- [Commits](Azure/azure-sdk-for-python@azure-storage-blob_12.16.0...azure-storage-blob_12.21.0)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: ipywidgets
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: azure-storage-blob
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
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@jhamman
chore: bump minimum numpy version to 1.24 (zarr-developers#2127)
cc2cdee
* chore: bump minimum version to 1.24
* Update .github/workflows/python-package.yml
@dstansby
Remove un-needed package installs in CI (zarr-developers#2095)
cb2c669
@dependabot
Bump the actions group with 2 updates (zarr-developers#2146)
6656d1a
Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `actions/setup-python` from 5.1.1 to 5.2.0
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v5.1.1...v5.2.0)
Updates `pypa/gh-action-pypi-publish` from 1.9.0 to 1.10.0
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.9.0...v1.10.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
...
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@dependabot
Bump numpy from 2.1.0 to 2.1.1 in the requirements group (zarr-develo…
f1978dd
…pers#2151)
Bumps the requirements group with 1 update: [numpy](https://github.com/numpy/numpy).
Updates `numpy` from 2.1.0 to 2.1.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.0...v2.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@jhamman
chore(docs): update release notes ahead of 2.18.4 (zarr-developers#2152)
88b2100
@dependabot
Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions…
aa9da2b
… group (zarr-developers#2161)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.0 to 1.10.1
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.0...v1.10.1)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
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@sneakers-the-rat
[docs] remove primary sidebar from tutorial (zarr-developers#2142)
774f5b1
* remove primary sidebar from tutorial
* lint
@dependabot
Bump pytest from 8.3.2 to 8.3.3 in the requirements group (zarr-devel…
e1d98cd
…opers#2172)
Bumps the requirements group with 1 update: [pytest](https://github.com/pytest-dev/pytest).
Updates `pytest` from 8.3.2 to 8.3.3
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.2...8.3.3)
---
updated-dependencies:
- dependency-name: pytest
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
a011079
…s#2220)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.1 to 1.10.2
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.1...v1.10.2)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
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@jhamman
Update TEAM.md (zarr-developers#2227)
53f600b
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
a9abbe7
…evelopers#2284)
Bumps the requirements group with 3 updates in the / directory: [redis](https://github.com/redis/redis-py), [pymongo](https://github.com/mongodb/mongo-python-driver) and [h5py](https://github.com/h5py/h5py).
Updates `redis` from 5.0.8 to 5.1.0
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.0.8...v5.1.0)
Updates `pymongo` from 4.8.0 to 4.10.0
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.8.0...4.10.0)
Updates `h5py` from 3.11.0 to 3.12.1
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](h5py/h5py@3.11.0...3.12.1)
---
updated-dependencies:
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: h5py
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
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@dependabot
Bump pymongo from 4.10.0 to 4.10.1 in the requirements group (zarr-de…
559c2e3
…velopers#2288)
Bumps the requirements group with 1 update: [pymongo](https://github.com/mongodb/mongo-python-driver).
Updates `pymongo` from 4.10.0 to 4.10.1
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.10.0...4.10.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@dstansby
Fix low contrast box titles (zarr-developers#2287) (zarr-developers#2292
6b9ab9e
)
@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
f175de4
…s#2304)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.2 to 1.10.3
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.2...v1.10.3)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump the requirements group with 2 updates (zarr-developers#2303)
a1dfd01
Bumps the requirements group with 2 updates: [numpy](https://github.com/numpy/numpy) and [redis](https://github.com/redis/redis-py).
Updates `numpy` from 2.1.1 to 2.1.2
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.1...v2.1.2)
Updates `redis` from 5.1.0 to 5.1.1
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.1.0...v5.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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Bump numcodecs from 0.13.0 to 0.13.1 in the requirements group (zarr-…
eaf5d7a
…developers#2326)
Bumps the requirements group with 1 update: [numcodecs](https://github.com/zarr-developers/numcodecs).
Updates `numcodecs` from 0.13.0 to 0.13.1
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.13.0...v0.13.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@jhamman
Merge branch 'main' ofhttps://github.com/zarr-developers/zarr-python…
0e52e52
…into v3-main-sync-merge
@jhamman
remove zarr.types from v2
7bcb92b
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V3 main sync w/ mergemergeV3 main sync w/ mergeOct 11, 2024
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Nice, all of these look like good updates to make!
Comment threadv3-roadmap-and-design.md
@dstansbydstansbyOct 11, 2024

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Is this still useful to have around? Or worth removing at this point? Happy either way, just asking the question :)
@jhammanjhammanOct 11, 2024

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I'd like to keep it here for now. In the future, we may evolve this to be a roadmap page in the docs.
@jhamman
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merged commit ce5f53e
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zarr-developers:v3Oct 11, 2024
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Revert "V3 main sync w/ merge (#2335)"
50b8d89
This reverts commit ce5f53e.
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Revert "V3 main sync w/ merge (#2335)" (#2339)
124640a
This reverts commit ce5f53e.

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@jhamman@dstansby@janickm@DimitriPapadopoulos@joshmoore@jeffpeck10x@hoodmane@sanketverma1704@d-v-b@DahnJ@dcherian@itcarroll@rabernat@sneakers-the-rat

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V3 main sync w/ merge by jhamman · Pull Request #2335 · zarr-developers/zarr-python · GitHub
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V3 main sync w/ merge - #2335
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V3 main sync w/ merge#2335
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This was not as bad as I thought it would be:
git checkout v3
git merge upstream/main
... # resolve conflicts
git commit

Supersedes #2330

Toward #2308
dependabotBotand others
added 30 commits
December 4, 2023 09:13
@dependabot
Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (zarr-develope…
ea90564
…rs#1586)
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.8.10...v1.8.11)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 (zarr-develo…
79e80b3
…pers#1587)
Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2.3.0 to 3.0.1.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](conda-incubator/setup-miniconda@v2.3.0...v3.0.1)
---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@janickm
* Cache result of FSStore._fsspec_installed (zarr-developers#1581)
25dbeed
Prevent runtime-overhead in doing this check multiple times
@dstansby
Bump version of black in pre-commit (zarr-developers#1559)
8579e21
@DimitriPapadopoulos@d-v-b
Use list comprehension where applicable (zarr-developers#1555)
54e31e9
Even if this is only a test, list comprehensions are faster than
repeatedly call append().
Also use tuple instead of list when possible.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dependabot@jhamman
Bump numcodecs from 0.11.0 to 0.12.1 (zarr-developers#1580)
7d2c9bf
Bumps [numcodecs](https://github.com/zarr-developers/numcodecs) from 0.11.0 to 0.12.1.
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.11.0...v0.12.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos@jhamman
Use format specification mini-language to format string (zarr-develop…
10dee6b
…ers#1558)
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos@d-v-b@jhamman
Single startswith() call instead of multiple ones (zarr-developers#1556)
40a6e81
It's faster and probably more readable.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@dependabot@jhamman
Bump pymongo from 4.5.0 to 4.6.1 (zarr-developers#1585)
5954ff9
Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.5.0 to 4.6.1.
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.5.0...4.6.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos
Move codespell options around (zarr-developers#1196)
6ad7b0e
Starting with codespell 2.2.2, options can be specified in
`pyrpoject.toml` in addition to `setup.cfg`:
https://github.com/codespell-project/codespell#using-a-config-file
Specifying options in a config file instead of command line options in
`.pre-commit-config.yaml` ensures codespell uses the same options when
run as pre-commit hook or from the command line in the repository root
directory.
@dependabot@joshmoore
Bump fsspec from 2023.10.0 to 2023.12.1 (zarr-developers#1600)
cf32382
* Bump fsspec from 2023.10.0 to 2023.12.1
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.10.0 to 2023.12.1.
- [Commits](fsspec/filesystem_spec@2023.10.0...2023.12.1)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update s3fs as well
* Fix s3fs
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@dstansby@d-v-b
Add type hints to zarr.create (zarr-developers#1536)
4d79cfc
* Add type hints to zarr.create
* Use protocol for MetaArray
* Use protocol for Synchronizer
* Fix Path typing
* Add release note
* Fix dim separator typing
* Ignore ... in coverage reporting
* Fix chunk typing
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dstansby@d-v-b
Remove unused mypy ignore comments (zarr-developers#1602)
12abd4e
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dependabot@jhamman
Bump actions/setup-python from 4.7.1 to 5.0.0 (zarr-developers#1605)
c2f5f00
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.1 to 5.0.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v4.7.1...v5.0.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@dependabot
Bump github/codeql-action from 2 to 3 (zarr-developers#1609)
490e0fe
Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3.
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](github/codeql-action@v2...v3)
---
updated-dependencies:
- dependency-name: github/codeql-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@pre-commit-ci@joshmoore
chore: update pre-commit hooks (zarr-developers#1448)
b5f79dd
* chore: update pre-commit hooks
updates:
- https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit
- [github.com/astral-sh/ruff-pre-commit: v0.0.224 → v0.1.8](astral-sh/ruff-pre-commit@v0.0.224...v0.1.8)
- [github.com/psf/black: 23.10.1 → 23.12.0](psf/black@23.10.1...23.12.0)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](codespell-project/codespell@v2.2.5...v2.2.6)
- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0)
- [github.com/pre-commit/mirrors-mypy: v1.3.0 → v1.7.1](pre-commit/mirrors-mypy@v1.3.0...v1.7.1)
* Attempt to fix ruff
* Use isinstance
---------
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1618)
e09ee14
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](astral-sh/ruff-pre-commit@v0.1.8...v0.1.9)
- [github.com/psf/black: 23.12.0 → 23.12.1](psf/black@23.12.0...23.12.1)
- [github.com/pre-commit/mirrors-mypy: v1.7.1 → v1.8.0](pre-commit/mirrors-mypy@v1.7.1...v1.8.0)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot@jhamman
Bump fsspec from 2023.12.1 to 2023.12.2 (zarr-developers#1606)
cd13989
* Bump fsspec from 2023.12.1 to 2023.12.2
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.12.1 to 2023.12.2.
- [Commits](fsspec/filesystem_spec@2023.12.1...2023.12.2)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update requirements_dev_optional.txt
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@dependabot
Bump pytest-doctestplus from 1.0.0 to 1.1.0 (zarr-developers#1619)
5fb420f
Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.0.0 to 1.1.0.
- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)
- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)
- [Commits](scientific-python/pytest-doctestplus@v1.0.0...v1.1.0)
---
updated-dependencies:
- dependency-name: pytest-doctestplus
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump pytest from 7.4.3 to 7.4.4 (zarr-developers#1622)
435a7ca
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1626)
6961fa9
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](astral-sh/ruff-pre-commit@v0.1.9...v0.1.11)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@jhamman
Create TEAM.md (zarr-developers#1628)
ee51835
@joshmoore@jhamman@jakirkham
Drop python 3.8 and numpy 1.20 (zarr-developers#1557)
c7d66b4
* Drop 3.8 and add 3.12
* Try removing line_profiler
* Also bump the minimal numpy to 1.21
* Drop 3.12 again
* Revert "Try removing line_profiler"
This reverts commit 837854b.
* Update release.rst
---------
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: jakirkham <jakirkham@gmail.com>
@jhamman
Add Norman Rzepka to core-dev team (zarr-developers#1630)
6ad464b
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1633)
a292dc4
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](astral-sh/ruff-pre-commit@v0.1.11...v0.1.13)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot@jhamman@joshmoore
Bump actions/download-artifact from 3 to 4 (zarr-developers#1611)
68c87bb
* Bump actions/download-artifact from 3 to 4
Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](actions/download-artifact@v3...v4)
---
updated-dependencies:
- dependency-name: actions/download-artifact
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
* Also bump upload-artifact
see https://github.com/actions/download-artifact?tab=readme-ov-file#breaking-changes
> Downloading artifacts that were created from action/upload-artifact@v3 and below are not supported.
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@jeffpeck10x@d-v-b@joshmoore
Update tutorial.rst to include section about accessing Zip Files on S3 (
1d56da0
zarr-developers#1615)
* Update tutorial.rst to include section about accessing Zip Files on S3
Per discussion here, add information about about accessing zip files on s3:
zarr-developers#1613
* Update release.rst
* Implement d-v-b's suggestions
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@jhamman@normanrz@sanketverma1704
doc(v3): add v3 roadmap and design document (zarr-developers#1583)
8ac8553
* doc(v3): add v3 roadmap and design document
* Update v3-roadmap-and-design.md
* updates after latest round of reviews
* Update v3-roadmap-and-design.md
Co-authored-by: Norman Rzepka <code@normanrz.com>
* Update v3-roadmap-and-design.md
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
---------
Co-authored-by: Norman Rzepka <code@normanrz.com>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1636)
a81db07
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](astral-sh/ruff-pre-commit@v0.1.13...v0.1.14)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@hoodmane@oeway
Fix zarr sync (zarr-developers#1663)
4f2ace4
This patch removes fasteners and disables zarr.sync which uses process and thread
Co-authored-by: Wei Ouyang <oeway007@gmail.com>
dependabotBotand others
added 19 commits
August 27, 2024 17:37
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
9e0b5e8
…evelopers#2129)
Bumps the requirements group with 3 updates in the / directory: [numpy](https://github.com/numpy/numpy), [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) and [azure-storage-blob](https://github.com/Azure/azure-sdk-for-python).
Updates `numpy` from 2.0.1 to 2.1.0
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.0.1...v2.1.0)
Updates `ipywidgets` from 8.1.3 to 8.1.5
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](jupyter-widgets/ipywidgets@8.1.3...8.1.5)
Updates `azure-storage-blob` from 12.16.0 to 12.21.0
- [Release notes](https://github.com/Azure/azure-sdk-for-python/releases)
- [Changelog](https://github.com/Azure/azure-sdk-for-python/blob/main/doc/esrp_release.md)
- [Commits](Azure/azure-sdk-for-python@azure-storage-blob_12.16.0...azure-storage-blob_12.21.0)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: ipywidgets
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: azure-storage-blob
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
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@jhamman
chore: bump minimum numpy version to 1.24 (zarr-developers#2127)
cc2cdee
* chore: bump minimum version to 1.24
* Update .github/workflows/python-package.yml
@dstansby
Remove un-needed package installs in CI (zarr-developers#2095)
cb2c669
@dependabot
Bump the actions group with 2 updates (zarr-developers#2146)
6656d1a
Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `actions/setup-python` from 5.1.1 to 5.2.0
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v5.1.1...v5.2.0)
Updates `pypa/gh-action-pypi-publish` from 1.9.0 to 1.10.0
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.9.0...v1.10.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
...
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@dependabot
Bump numpy from 2.1.0 to 2.1.1 in the requirements group (zarr-develo…
f1978dd
…pers#2151)
Bumps the requirements group with 1 update: [numpy](https://github.com/numpy/numpy).
Updates `numpy` from 2.1.0 to 2.1.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.0...v2.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@jhamman
chore(docs): update release notes ahead of 2.18.4 (zarr-developers#2152)
88b2100
@dependabot
Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions…
aa9da2b
… group (zarr-developers#2161)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.0 to 1.10.1
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.0...v1.10.1)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
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@sneakers-the-rat
[docs] remove primary sidebar from tutorial (zarr-developers#2142)
774f5b1
* remove primary sidebar from tutorial
* lint
@dependabot
Bump pytest from 8.3.2 to 8.3.3 in the requirements group (zarr-devel…
e1d98cd
…opers#2172)
Bumps the requirements group with 1 update: [pytest](https://github.com/pytest-dev/pytest).
Updates `pytest` from 8.3.2 to 8.3.3
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.2...8.3.3)
---
updated-dependencies:
- dependency-name: pytest
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
a011079
…s#2220)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.1 to 1.10.2
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.1...v1.10.2)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@jhamman
Update TEAM.md (zarr-developers#2227)
53f600b
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
a9abbe7
…evelopers#2284)
Bumps the requirements group with 3 updates in the / directory: [redis](https://github.com/redis/redis-py), [pymongo](https://github.com/mongodb/mongo-python-driver) and [h5py](https://github.com/h5py/h5py).
Updates `redis` from 5.0.8 to 5.1.0
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.0.8...v5.1.0)
Updates `pymongo` from 4.8.0 to 4.10.0
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.8.0...4.10.0)
Updates `h5py` from 3.11.0 to 3.12.1
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](h5py/h5py@3.11.0...3.12.1)
---
updated-dependencies:
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: h5py
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
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@dependabot
Bump pymongo from 4.10.0 to 4.10.1 in the requirements group (zarr-de…
559c2e3
…velopers#2288)
Bumps the requirements group with 1 update: [pymongo](https://github.com/mongodb/mongo-python-driver).
Updates `pymongo` from 4.10.0 to 4.10.1
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.10.0...4.10.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dstansby
Fix low contrast box titles (zarr-developers#2287) (zarr-developers#2292
6b9ab9e
)
@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
f175de4
…s#2304)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.2 to 1.10.3
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.2...v1.10.3)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump the requirements group with 2 updates (zarr-developers#2303)
a1dfd01
Bumps the requirements group with 2 updates: [numpy](https://github.com/numpy/numpy) and [redis](https://github.com/redis/redis-py).
Updates `numpy` from 2.1.1 to 2.1.2
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.1...v2.1.2)
Updates `redis` from 5.1.0 to 5.1.1
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.1.0...v5.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@dependabot
Bump numcodecs from 0.13.0 to 0.13.1 in the requirements group (zarr-…
eaf5d7a
…developers#2326)
Bumps the requirements group with 1 update: [numcodecs](https://github.com/zarr-developers/numcodecs).
Updates `numcodecs` from 0.13.0 to 0.13.1
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.13.0...v0.13.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@jhamman
Merge branch 'main' ofhttps://github.com/zarr-developers/zarr-python…
0e52e52
…into v3-main-sync-merge
@jhamman
remove zarr.types from v2
7bcb92b
@jhammanjhamman
mentioned this pull request
Oct 11, 2024
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@jhammanjhamman
changed the title
V3 main sync w/ mergemergeV3 main sync w/ mergeOct 11, 2024
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Nice, all of these look like good updates to make!
Comment threadv3-roadmap-and-design.md
@dstansbydstansbyOct 11, 2024

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Is this still useful to have around? Or worth removing at this point? Happy either way, just asking the question :)
@jhammanjhammanOct 11, 2024

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I'd like to keep it here for now. In the future, we may evolve this to be a roadmap page in the docs.
@jhamman
jhamman
merged commit ce5f53e
into
zarr-developers:v3Oct 11, 2024
jhamman added a commit
that referenced
this pull request
Oct 11, 2024
@jhamman
Revert "V3 main sync w/ merge (#2335)"
50b8d89
This reverts commit ce5f53e.
jhamman added a commit
that referenced
this pull request
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@jhamman
Revert "V3 main sync w/ merge (#2335)" (#2339)
124640a
This reverts commit ce5f53e.

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14 participants

@jhamman@dstansby@janickm@DimitriPapadopoulos@joshmoore@jeffpeck10x@hoodmane@sanketverma1704@d-v-b@DahnJ@dcherian@itcarroll@rabernat@sneakers-the-rat

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Strip utm_, fbclid, gclid, etc. from all links on page
(function() {
var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',
'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',
'ref', 'ref_src', 'source', 'medium', 'campaign'];
function cleanUrl(url) {
try {
var u = new URL(url, window.location.origin);
var changed = false;
trackingParams.forEach(function(p) {
if (u.searchParams.has(p)) {
u.searchParams.delete(p);
changed = true;
}
});
return changed ? u.toString() : url;
} catch (e) {
return url;
}
}
function cleanLinks() {
document.querySelectorAll('a[href]').forEach(function(a) {
var clean = cleanUrl(a.href);
if (clean !== a.href) a.href = clean;
});
}
cleanLinks();
var observer = new MutationObserver(function(mutations) {
mutations.forEach(function(m) {
m.addedNodes.forEach(function(node) {
if (node.nodeType === 1) {
if (node.tagName === 'A') cleanLinks();
node.querySelectorAll('a[href]').forEach(function(a) {
var clean = cleanUrl(a.href);
if (clean !== a.href) a.href = clean;
});
}
});
});
});
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '
V3 main sync w/ merge by jhamman · Pull Request #2335 · zarr-developers/zarr-python · GitHub
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V3 main sync w/ merge - #2335
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V3 main sync w/ merge#2335
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@jhamman
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This was not as bad as I thought it would be:
git checkout v3
git merge upstream/main
... # resolve conflicts
git commit

Supersedes #2330

Toward #2308
dependabotBotand others
added 30 commits
December 4, 2023 09:13
@dependabot
Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (zarr-develope…
ea90564
…rs#1586)
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.8.10...v1.8.11)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 (zarr-develo…
79e80b3
…pers#1587)
Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2.3.0 to 3.0.1.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](conda-incubator/setup-miniconda@v2.3.0...v3.0.1)
---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@janickm
* Cache result of FSStore._fsspec_installed (zarr-developers#1581)
25dbeed
Prevent runtime-overhead in doing this check multiple times
@dstansby
Bump version of black in pre-commit (zarr-developers#1559)
8579e21
@DimitriPapadopoulos@d-v-b
Use list comprehension where applicable (zarr-developers#1555)
54e31e9
Even if this is only a test, list comprehensions are faster than
repeatedly call append().
Also use tuple instead of list when possible.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dependabot@jhamman
Bump numcodecs from 0.11.0 to 0.12.1 (zarr-developers#1580)
7d2c9bf
Bumps [numcodecs](https://github.com/zarr-developers/numcodecs) from 0.11.0 to 0.12.1.
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.11.0...v0.12.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos@jhamman
Use format specification mini-language to format string (zarr-develop…
10dee6b
…ers#1558)
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos@d-v-b@jhamman
Single startswith() call instead of multiple ones (zarr-developers#1556)
40a6e81
It's faster and probably more readable.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@dependabot@jhamman
Bump pymongo from 4.5.0 to 4.6.1 (zarr-developers#1585)
5954ff9
Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.5.0 to 4.6.1.
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.5.0...4.6.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos
Move codespell options around (zarr-developers#1196)
6ad7b0e
Starting with codespell 2.2.2, options can be specified in
`pyrpoject.toml` in addition to `setup.cfg`:
https://github.com/codespell-project/codespell#using-a-config-file
Specifying options in a config file instead of command line options in
`.pre-commit-config.yaml` ensures codespell uses the same options when
run as pre-commit hook or from the command line in the repository root
directory.
@dependabot@joshmoore
Bump fsspec from 2023.10.0 to 2023.12.1 (zarr-developers#1600)
cf32382
* Bump fsspec from 2023.10.0 to 2023.12.1
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.10.0 to 2023.12.1.
- [Commits](fsspec/filesystem_spec@2023.10.0...2023.12.1)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update s3fs as well
* Fix s3fs
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@dstansby@d-v-b
Add type hints to zarr.create (zarr-developers#1536)
4d79cfc
* Add type hints to zarr.create
* Use protocol for MetaArray
* Use protocol for Synchronizer
* Fix Path typing
* Add release note
* Fix dim separator typing
* Ignore ... in coverage reporting
* Fix chunk typing
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dstansby@d-v-b
Remove unused mypy ignore comments (zarr-developers#1602)
12abd4e
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dependabot@jhamman
Bump actions/setup-python from 4.7.1 to 5.0.0 (zarr-developers#1605)
c2f5f00
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.1 to 5.0.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v4.7.1...v5.0.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-major
...
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@dependabot
Bump github/codeql-action from 2 to 3 (zarr-developers#1609)
490e0fe
Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3.
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](github/codeql-action@v2...v3)
---
updated-dependencies:
- dependency-name: github/codeql-action
dependency-type: direct:production
update-type: version-update:semver-major
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@pre-commit-ci@joshmoore
chore: update pre-commit hooks (zarr-developers#1448)
b5f79dd
* chore: update pre-commit hooks
updates:
- https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit
- [github.com/astral-sh/ruff-pre-commit: v0.0.224 → v0.1.8](astral-sh/ruff-pre-commit@v0.0.224...v0.1.8)
- [github.com/psf/black: 23.10.1 → 23.12.0](psf/black@23.10.1...23.12.0)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](codespell-project/codespell@v2.2.5...v2.2.6)
- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0)
- [github.com/pre-commit/mirrors-mypy: v1.3.0 → v1.7.1](pre-commit/mirrors-mypy@v1.3.0...v1.7.1)
* Attempt to fix ruff
* Use isinstance
---------
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1618)
e09ee14
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](astral-sh/ruff-pre-commit@v0.1.8...v0.1.9)
- [github.com/psf/black: 23.12.0 → 23.12.1](psf/black@23.12.0...23.12.1)
- [github.com/pre-commit/mirrors-mypy: v1.7.1 → v1.8.0](pre-commit/mirrors-mypy@v1.7.1...v1.8.0)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot@jhamman
Bump fsspec from 2023.12.1 to 2023.12.2 (zarr-developers#1606)
cd13989
* Bump fsspec from 2023.12.1 to 2023.12.2
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.12.1 to 2023.12.2.
- [Commits](fsspec/filesystem_spec@2023.12.1...2023.12.2)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-patch
...
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* Update requirements_dev_optional.txt
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@dependabot
Bump pytest-doctestplus from 1.0.0 to 1.1.0 (zarr-developers#1619)
5fb420f
Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.0.0 to 1.1.0.
- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)
- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)
- [Commits](scientific-python/pytest-doctestplus@v1.0.0...v1.1.0)
---
updated-dependencies:
- dependency-name: pytest-doctestplus
dependency-type: direct:development
update-type: version-update:semver-minor
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@dependabot
Bump pytest from 7.4.3 to 7.4.4 (zarr-developers#1622)
435a7ca
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1626)
6961fa9
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](astral-sh/ruff-pre-commit@v0.1.9...v0.1.11)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@jhamman
Create TEAM.md (zarr-developers#1628)
ee51835
@joshmoore@jhamman@jakirkham
Drop python 3.8 and numpy 1.20 (zarr-developers#1557)
c7d66b4
* Drop 3.8 and add 3.12
* Try removing line_profiler
* Also bump the minimal numpy to 1.21
* Drop 3.12 again
* Revert "Try removing line_profiler"
This reverts commit 837854b.
* Update release.rst
---------
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: jakirkham <jakirkham@gmail.com>
@jhamman
Add Norman Rzepka to core-dev team (zarr-developers#1630)
6ad464b
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1633)
a292dc4
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](astral-sh/ruff-pre-commit@v0.1.11...v0.1.13)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot@jhamman@joshmoore
Bump actions/download-artifact from 3 to 4 (zarr-developers#1611)
68c87bb
* Bump actions/download-artifact from 3 to 4
Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](actions/download-artifact@v3...v4)
---
updated-dependencies:
- dependency-name: actions/download-artifact
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
* Also bump upload-artifact
see https://github.com/actions/download-artifact?tab=readme-ov-file#breaking-changes
> Downloading artifacts that were created from action/upload-artifact@v3 and below are not supported.
---------
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@jeffpeck10x@d-v-b@joshmoore
Update tutorial.rst to include section about accessing Zip Files on S3 (
1d56da0
zarr-developers#1615)
* Update tutorial.rst to include section about accessing Zip Files on S3
Per discussion here, add information about about accessing zip files on s3:
zarr-developers#1613
* Update release.rst
* Implement d-v-b's suggestions
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@jhamman@normanrz@sanketverma1704
doc(v3): add v3 roadmap and design document (zarr-developers#1583)
8ac8553
* doc(v3): add v3 roadmap and design document
* Update v3-roadmap-and-design.md
* updates after latest round of reviews
* Update v3-roadmap-and-design.md
Co-authored-by: Norman Rzepka <code@normanrz.com>
* Update v3-roadmap-and-design.md
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
---------
Co-authored-by: Norman Rzepka <code@normanrz.com>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1636)
a81db07
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](astral-sh/ruff-pre-commit@v0.1.13...v0.1.14)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@hoodmane@oeway
Fix zarr sync (zarr-developers#1663)
4f2ace4
This patch removes fasteners and disables zarr.sync which uses process and thread
Co-authored-by: Wei Ouyang <oeway007@gmail.com>
dependabotBotand others
added 19 commits
August 27, 2024 17:37
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
9e0b5e8
…evelopers#2129)
Bumps the requirements group with 3 updates in the / directory: [numpy](https://github.com/numpy/numpy), [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) and [azure-storage-blob](https://github.com/Azure/azure-sdk-for-python).
Updates `numpy` from 2.0.1 to 2.1.0
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.0.1...v2.1.0)
Updates `ipywidgets` from 8.1.3 to 8.1.5
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](jupyter-widgets/ipywidgets@8.1.3...8.1.5)
Updates `azure-storage-blob` from 12.16.0 to 12.21.0
- [Release notes](https://github.com/Azure/azure-sdk-for-python/releases)
- [Changelog](https://github.com/Azure/azure-sdk-for-python/blob/main/doc/esrp_release.md)
- [Commits](Azure/azure-sdk-for-python@azure-storage-blob_12.16.0...azure-storage-blob_12.21.0)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: ipywidgets
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: azure-storage-blob
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
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@jhamman
chore: bump minimum numpy version to 1.24 (zarr-developers#2127)
cc2cdee
* chore: bump minimum version to 1.24
* Update .github/workflows/python-package.yml
@dstansby
Remove un-needed package installs in CI (zarr-developers#2095)
cb2c669
@dependabot
Bump the actions group with 2 updates (zarr-developers#2146)
6656d1a
Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `actions/setup-python` from 5.1.1 to 5.2.0
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v5.1.1...v5.2.0)
Updates `pypa/gh-action-pypi-publish` from 1.9.0 to 1.10.0
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.9.0...v1.10.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
...
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@dependabot
Bump numpy from 2.1.0 to 2.1.1 in the requirements group (zarr-develo…
f1978dd
…pers#2151)
Bumps the requirements group with 1 update: [numpy](https://github.com/numpy/numpy).
Updates `numpy` from 2.1.0 to 2.1.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.0...v2.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@jhamman
chore(docs): update release notes ahead of 2.18.4 (zarr-developers#2152)
88b2100
@dependabot
Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions…
aa9da2b
… group (zarr-developers#2161)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.0 to 1.10.1
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.0...v1.10.1)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
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@sneakers-the-rat
[docs] remove primary sidebar from tutorial (zarr-developers#2142)
774f5b1
* remove primary sidebar from tutorial
* lint
@dependabot
Bump pytest from 8.3.2 to 8.3.3 in the requirements group (zarr-devel…
e1d98cd
…opers#2172)
Bumps the requirements group with 1 update: [pytest](https://github.com/pytest-dev/pytest).
Updates `pytest` from 8.3.2 to 8.3.3
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.2...8.3.3)
---
updated-dependencies:
- dependency-name: pytest
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
a011079
…s#2220)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.1 to 1.10.2
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.1...v1.10.2)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
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@jhamman
Update TEAM.md (zarr-developers#2227)
53f600b
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
a9abbe7
…evelopers#2284)
Bumps the requirements group with 3 updates in the / directory: [redis](https://github.com/redis/redis-py), [pymongo](https://github.com/mongodb/mongo-python-driver) and [h5py](https://github.com/h5py/h5py).
Updates `redis` from 5.0.8 to 5.1.0
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.0.8...v5.1.0)
Updates `pymongo` from 4.8.0 to 4.10.0
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.8.0...4.10.0)
Updates `h5py` from 3.11.0 to 3.12.1
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](h5py/h5py@3.11.0...3.12.1)
---
updated-dependencies:
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: h5py
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
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@dependabot
Bump pymongo from 4.10.0 to 4.10.1 in the requirements group (zarr-de…
559c2e3
…velopers#2288)
Bumps the requirements group with 1 update: [pymongo](https://github.com/mongodb/mongo-python-driver).
Updates `pymongo` from 4.10.0 to 4.10.1
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.10.0...4.10.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@dstansby
Fix low contrast box titles (zarr-developers#2287) (zarr-developers#2292
6b9ab9e
)
@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
f175de4
…s#2304)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.2 to 1.10.3
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.2...v1.10.3)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
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@dependabot
Bump the requirements group with 2 updates (zarr-developers#2303)
a1dfd01
Bumps the requirements group with 2 updates: [numpy](https://github.com/numpy/numpy) and [redis](https://github.com/redis/redis-py).
Updates `numpy` from 2.1.1 to 2.1.2
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.1...v2.1.2)
Updates `redis` from 5.1.0 to 5.1.1
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.1.0...v5.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@dependabot
Bump numcodecs from 0.13.0 to 0.13.1 in the requirements group (zarr-…
eaf5d7a
…developers#2326)
Bumps the requirements group with 1 update: [numcodecs](https://github.com/zarr-developers/numcodecs).
Updates `numcodecs` from 0.13.0 to 0.13.1
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.13.0...v0.13.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@jhamman
Merge branch 'main' ofhttps://github.com/zarr-developers/zarr-python…
0e52e52
…into v3-main-sync-merge
@jhamman
remove zarr.types from v2
7bcb92b
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V3 main sync w/ mergemergeV3 main sync w/ mergeOct 11, 2024
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Nice, all of these look like good updates to make!
Comment threadv3-roadmap-and-design.md
@dstansbydstansbyOct 11, 2024

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Is this still useful to have around? Or worth removing at this point? Happy either way, just asking the question :)
@jhammanjhammanOct 11, 2024

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I'd like to keep it here for now. In the future, we may evolve this to be a roadmap page in the docs.
@jhamman
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merged commit ce5f53e
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zarr-developers:v3Oct 11, 2024
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Revert "V3 main sync w/ merge (#2335)"
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@jhamman
Revert "V3 main sync w/ merge (#2335)" (#2339)
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This reverts commit ce5f53e.

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14 participants

@jhamman@dstansby@janickm@DimitriPapadopoulos@joshmoore@jeffpeck10x@hoodmane@sanketverma1704@d-v-b@DahnJ@dcherian@itcarroll@rabernat@sneakers-the-rat

, 'i');
if (__m === '*' || __re.test(location.href)) {
// Auto-enable theater mode on YouTube
(function() {
function tryTheater() {
var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]');
if (btn && !btn.classList.contains('activated')) {
btn.click();
}
}
// Try immediately
tryTheater();
// Try after navigation (SPA)
var lastUrl = location.href;
setInterval(function() {
if (location.href !== lastUrl) {
lastUrl = location.href;
setTimeout(tryTheater, 500);
}
}, 1000);
// Also try on player load
var observer = new MutationObserver(tryTheater);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
V3 main sync w/ merge by jhamman · Pull Request #2335 · zarr-developers/zarr-python · GitHub
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V3 main sync w/ merge - #2335
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jhamman merged 132 commits into
zarr-developers:v3from 
jhamman:v3-main-sync-merge
Oct 11, 2024
Merged
V3 main sync w/ merge#2335
jhamman merged 132 commits into
zarr-developers:v3from 
jhamman:v3-main-sync-merge
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@jhamman
@jhammanjhamman
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Oct 11, 2024

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This was not as bad as I thought it would be:
git checkout v3
git merge upstream/main
... # resolve conflicts
git commit

Supersedes #2330

Toward #2308
dependabotBotand others
added 30 commits
December 4, 2023 09:13
@dependabot
Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (zarr-develope…
ea90564
…rs#1586)
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.8.10...v1.8.11)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 (zarr-develo…
79e80b3
…pers#1587)
Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2.3.0 to 3.0.1.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](conda-incubator/setup-miniconda@v2.3.0...v3.0.1)
---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@janickm
* Cache result of FSStore._fsspec_installed (zarr-developers#1581)
25dbeed
Prevent runtime-overhead in doing this check multiple times
@dstansby
Bump version of black in pre-commit (zarr-developers#1559)
8579e21
@DimitriPapadopoulos@d-v-b
Use list comprehension where applicable (zarr-developers#1555)
54e31e9
Even if this is only a test, list comprehensions are faster than
repeatedly call append().
Also use tuple instead of list when possible.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dependabot@jhamman
Bump numcodecs from 0.11.0 to 0.12.1 (zarr-developers#1580)
7d2c9bf
Bumps [numcodecs](https://github.com/zarr-developers/numcodecs) from 0.11.0 to 0.12.1.
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.11.0...v0.12.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos@jhamman
Use format specification mini-language to format string (zarr-develop…
10dee6b
…ers#1558)
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos@d-v-b@jhamman
Single startswith() call instead of multiple ones (zarr-developers#1556)
40a6e81
It's faster and probably more readable.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@dependabot@jhamman
Bump pymongo from 4.5.0 to 4.6.1 (zarr-developers#1585)
5954ff9
Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.5.0 to 4.6.1.
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.5.0...4.6.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos
Move codespell options around (zarr-developers#1196)
6ad7b0e
Starting with codespell 2.2.2, options can be specified in
`pyrpoject.toml` in addition to `setup.cfg`:
https://github.com/codespell-project/codespell#using-a-config-file
Specifying options in a config file instead of command line options in
`.pre-commit-config.yaml` ensures codespell uses the same options when
run as pre-commit hook or from the command line in the repository root
directory.
@dependabot@joshmoore
Bump fsspec from 2023.10.0 to 2023.12.1 (zarr-developers#1600)
cf32382
* Bump fsspec from 2023.10.0 to 2023.12.1
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.10.0 to 2023.12.1.
- [Commits](fsspec/filesystem_spec@2023.10.0...2023.12.1)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update s3fs as well
* Fix s3fs
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@dstansby@d-v-b
Add type hints to zarr.create (zarr-developers#1536)
4d79cfc
* Add type hints to zarr.create
* Use protocol for MetaArray
* Use protocol for Synchronizer
* Fix Path typing
* Add release note
* Fix dim separator typing
* Ignore ... in coverage reporting
* Fix chunk typing
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dstansby@d-v-b
Remove unused mypy ignore comments (zarr-developers#1602)
12abd4e
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dependabot@jhamman
Bump actions/setup-python from 4.7.1 to 5.0.0 (zarr-developers#1605)
c2f5f00
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.1 to 5.0.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v4.7.1...v5.0.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@dependabot
Bump github/codeql-action from 2 to 3 (zarr-developers#1609)
490e0fe
Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3.
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](github/codeql-action@v2...v3)
---
updated-dependencies:
- dependency-name: github/codeql-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@pre-commit-ci@joshmoore
chore: update pre-commit hooks (zarr-developers#1448)
b5f79dd
* chore: update pre-commit hooks
updates:
- https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit
- [github.com/astral-sh/ruff-pre-commit: v0.0.224 → v0.1.8](astral-sh/ruff-pre-commit@v0.0.224...v0.1.8)
- [github.com/psf/black: 23.10.1 → 23.12.0](psf/black@23.10.1...23.12.0)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](codespell-project/codespell@v2.2.5...v2.2.6)
- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0)
- [github.com/pre-commit/mirrors-mypy: v1.3.0 → v1.7.1](pre-commit/mirrors-mypy@v1.3.0...v1.7.1)
* Attempt to fix ruff
* Use isinstance
---------
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1618)
e09ee14
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](astral-sh/ruff-pre-commit@v0.1.8...v0.1.9)
- [github.com/psf/black: 23.12.0 → 23.12.1](psf/black@23.12.0...23.12.1)
- [github.com/pre-commit/mirrors-mypy: v1.7.1 → v1.8.0](pre-commit/mirrors-mypy@v1.7.1...v1.8.0)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot@jhamman
Bump fsspec from 2023.12.1 to 2023.12.2 (zarr-developers#1606)
cd13989
* Bump fsspec from 2023.12.1 to 2023.12.2
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.12.1 to 2023.12.2.
- [Commits](fsspec/filesystem_spec@2023.12.1...2023.12.2)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update requirements_dev_optional.txt
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@dependabot
Bump pytest-doctestplus from 1.0.0 to 1.1.0 (zarr-developers#1619)
5fb420f
Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.0.0 to 1.1.0.
- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)
- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)
- [Commits](scientific-python/pytest-doctestplus@v1.0.0...v1.1.0)
---
updated-dependencies:
- dependency-name: pytest-doctestplus
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump pytest from 7.4.3 to 7.4.4 (zarr-developers#1622)
435a7ca
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1626)
6961fa9
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](astral-sh/ruff-pre-commit@v0.1.9...v0.1.11)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@jhamman
Create TEAM.md (zarr-developers#1628)
ee51835
@joshmoore@jhamman@jakirkham
Drop python 3.8 and numpy 1.20 (zarr-developers#1557)
c7d66b4
* Drop 3.8 and add 3.12
* Try removing line_profiler
* Also bump the minimal numpy to 1.21
* Drop 3.12 again
* Revert "Try removing line_profiler"
This reverts commit 837854b.
* Update release.rst
---------
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: jakirkham <jakirkham@gmail.com>
@jhamman
Add Norman Rzepka to core-dev team (zarr-developers#1630)
6ad464b
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1633)
a292dc4
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](astral-sh/ruff-pre-commit@v0.1.11...v0.1.13)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot@jhamman@joshmoore
Bump actions/download-artifact from 3 to 4 (zarr-developers#1611)
68c87bb
* Bump actions/download-artifact from 3 to 4
Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](actions/download-artifact@v3...v4)
---
updated-dependencies:
- dependency-name: actions/download-artifact
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
* Also bump upload-artifact
see https://github.com/actions/download-artifact?tab=readme-ov-file#breaking-changes
> Downloading artifacts that were created from action/upload-artifact@v3 and below are not supported.
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@jeffpeck10x@d-v-b@joshmoore
Update tutorial.rst to include section about accessing Zip Files on S3 (
1d56da0
zarr-developers#1615)
* Update tutorial.rst to include section about accessing Zip Files on S3
Per discussion here, add information about about accessing zip files on s3:
zarr-developers#1613
* Update release.rst
* Implement d-v-b's suggestions
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@jhamman@normanrz@sanketverma1704
doc(v3): add v3 roadmap and design document (zarr-developers#1583)
8ac8553
* doc(v3): add v3 roadmap and design document
* Update v3-roadmap-and-design.md
* updates after latest round of reviews
* Update v3-roadmap-and-design.md
Co-authored-by: Norman Rzepka <code@normanrz.com>
* Update v3-roadmap-and-design.md
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
---------
Co-authored-by: Norman Rzepka <code@normanrz.com>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1636)
a81db07
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](astral-sh/ruff-pre-commit@v0.1.13...v0.1.14)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@hoodmane@oeway
Fix zarr sync (zarr-developers#1663)
4f2ace4
This patch removes fasteners and disables zarr.sync which uses process and thread
Co-authored-by: Wei Ouyang <oeway007@gmail.com>
dependabotBotand others
added 19 commits
August 27, 2024 17:37
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
9e0b5e8
…evelopers#2129)
Bumps the requirements group with 3 updates in the / directory: [numpy](https://github.com/numpy/numpy), [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) and [azure-storage-blob](https://github.com/Azure/azure-sdk-for-python).
Updates `numpy` from 2.0.1 to 2.1.0
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.0.1...v2.1.0)
Updates `ipywidgets` from 8.1.3 to 8.1.5
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](jupyter-widgets/ipywidgets@8.1.3...8.1.5)
Updates `azure-storage-blob` from 12.16.0 to 12.21.0
- [Release notes](https://github.com/Azure/azure-sdk-for-python/releases)
- [Changelog](https://github.com/Azure/azure-sdk-for-python/blob/main/doc/esrp_release.md)
- [Commits](Azure/azure-sdk-for-python@azure-storage-blob_12.16.0...azure-storage-blob_12.21.0)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: ipywidgets
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: azure-storage-blob
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@jhamman
chore: bump minimum numpy version to 1.24 (zarr-developers#2127)
cc2cdee
* chore: bump minimum version to 1.24
* Update .github/workflows/python-package.yml
@dstansby
Remove un-needed package installs in CI (zarr-developers#2095)
cb2c669
@dependabot
Bump the actions group with 2 updates (zarr-developers#2146)
6656d1a
Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `actions/setup-python` from 5.1.1 to 5.2.0
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v5.1.1...v5.2.0)
Updates `pypa/gh-action-pypi-publish` from 1.9.0 to 1.10.0
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.9.0...v1.10.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump numpy from 2.1.0 to 2.1.1 in the requirements group (zarr-develo…
f1978dd
…pers#2151)
Bumps the requirements group with 1 update: [numpy](https://github.com/numpy/numpy).
Updates `numpy` from 2.1.0 to 2.1.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.0...v2.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@jhamman
chore(docs): update release notes ahead of 2.18.4 (zarr-developers#2152)
88b2100
@dependabot
Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions…
aa9da2b
… group (zarr-developers#2161)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.0 to 1.10.1
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.0...v1.10.1)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@sneakers-the-rat
[docs] remove primary sidebar from tutorial (zarr-developers#2142)
774f5b1
* remove primary sidebar from tutorial
* lint
@dependabot
Bump pytest from 8.3.2 to 8.3.3 in the requirements group (zarr-devel…
e1d98cd
…opers#2172)
Bumps the requirements group with 1 update: [pytest](https://github.com/pytest-dev/pytest).
Updates `pytest` from 8.3.2 to 8.3.3
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.2...8.3.3)
---
updated-dependencies:
- dependency-name: pytest
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
a011079
…s#2220)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.1 to 1.10.2
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.1...v1.10.2)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@jhamman
Update TEAM.md (zarr-developers#2227)
53f600b
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
a9abbe7
…evelopers#2284)
Bumps the requirements group with 3 updates in the / directory: [redis](https://github.com/redis/redis-py), [pymongo](https://github.com/mongodb/mongo-python-driver) and [h5py](https://github.com/h5py/h5py).
Updates `redis` from 5.0.8 to 5.1.0
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.0.8...v5.1.0)
Updates `pymongo` from 4.8.0 to 4.10.0
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.8.0...4.10.0)
Updates `h5py` from 3.11.0 to 3.12.1
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](h5py/h5py@3.11.0...3.12.1)
---
updated-dependencies:
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: h5py
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump pymongo from 4.10.0 to 4.10.1 in the requirements group (zarr-de…
559c2e3
…velopers#2288)
Bumps the requirements group with 1 update: [pymongo](https://github.com/mongodb/mongo-python-driver).
Updates `pymongo` from 4.10.0 to 4.10.1
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.10.0...4.10.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dstansby
Fix low contrast box titles (zarr-developers#2287) (zarr-developers#2292
6b9ab9e
)
@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
f175de4
…s#2304)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.2 to 1.10.3
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.2...v1.10.3)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump the requirements group with 2 updates (zarr-developers#2303)
a1dfd01
Bumps the requirements group with 2 updates: [numpy](https://github.com/numpy/numpy) and [redis](https://github.com/redis/redis-py).
Updates `numpy` from 2.1.1 to 2.1.2
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.1...v2.1.2)
Updates `redis` from 5.1.0 to 5.1.1
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.1.0...v5.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump numcodecs from 0.13.0 to 0.13.1 in the requirements group (zarr-…
eaf5d7a
…developers#2326)
Bumps the requirements group with 1 update: [numcodecs](https://github.com/zarr-developers/numcodecs).
Updates `numcodecs` from 0.13.0 to 0.13.1
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.13.0...v0.13.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@jhamman
Merge branch 'main' ofhttps://github.com/zarr-developers/zarr-python…
0e52e52
…into v3-main-sync-merge
@jhamman
remove zarr.types from v2
7bcb92b
@jhammanjhamman
mentioned this pull request
Oct 11, 2024
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@jhammanjhamman
changed the title
V3 main sync w/ mergemergeV3 main sync w/ mergeOct 11, 2024
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Nice, all of these look like good updates to make!
Comment threadv3-roadmap-and-design.md
@dstansbydstansbyOct 11, 2024

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Is this still useful to have around? Or worth removing at this point? Happy either way, just asking the question :)
@jhammanjhammanOct 11, 2024

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I'd like to keep it here for now. In the future, we may evolve this to be a roadmap page in the docs.
@jhamman
jhamman
merged commit ce5f53e
into
zarr-developers:v3Oct 11, 2024
jhamman added a commit
that referenced
this pull request
Oct 11, 2024
@jhamman
Revert "V3 main sync w/ merge (#2335)"
50b8d89
This reverts commit ce5f53e.
jhamman added a commit
that referenced
this pull request
Oct 11, 2024
@jhamman
Revert "V3 main sync w/ merge (#2335)" (#2339)
124640a
This reverts commit ce5f53e.

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14 participants

@jhamman@dstansby@janickm@DimitriPapadopoulos@joshmoore@jeffpeck10x@hoodmane@sanketverma1704@d-v-b@DahnJ@dcherian@itcarroll@rabernat@sneakers-the-rat

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V3 main sync w/ merge by jhamman · Pull Request #2335 · zarr-developers/zarr-python · GitHub
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V3 main sync w/ merge - #2335
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Oct 11, 2024
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V3 main sync w/ merge#2335
jhamman merged 132 commits into
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@jhamman
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This was not as bad as I thought it would be:
git checkout v3
git merge upstream/main
... # resolve conflicts
git commit

Supersedes #2330

Toward #2308
dependabotBotand others
added 30 commits
December 4, 2023 09:13
@dependabot
Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (zarr-develope…
ea90564
…rs#1586)
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.8.10...v1.8.11)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 (zarr-develo…
79e80b3
…pers#1587)
Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2.3.0 to 3.0.1.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](conda-incubator/setup-miniconda@v2.3.0...v3.0.1)
---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@janickm
* Cache result of FSStore._fsspec_installed (zarr-developers#1581)
25dbeed
Prevent runtime-overhead in doing this check multiple times
@dstansby
Bump version of black in pre-commit (zarr-developers#1559)
8579e21
@DimitriPapadopoulos@d-v-b
Use list comprehension where applicable (zarr-developers#1555)
54e31e9
Even if this is only a test, list comprehensions are faster than
repeatedly call append().
Also use tuple instead of list when possible.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dependabot@jhamman
Bump numcodecs from 0.11.0 to 0.12.1 (zarr-developers#1580)
7d2c9bf
Bumps [numcodecs](https://github.com/zarr-developers/numcodecs) from 0.11.0 to 0.12.1.
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.11.0...v0.12.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos@jhamman
Use format specification mini-language to format string (zarr-develop…
10dee6b
…ers#1558)
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos@d-v-b@jhamman
Single startswith() call instead of multiple ones (zarr-developers#1556)
40a6e81
It's faster and probably more readable.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@dependabot@jhamman
Bump pymongo from 4.5.0 to 4.6.1 (zarr-developers#1585)
5954ff9
Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.5.0 to 4.6.1.
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.5.0...4.6.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos
Move codespell options around (zarr-developers#1196)
6ad7b0e
Starting with codespell 2.2.2, options can be specified in
`pyrpoject.toml` in addition to `setup.cfg`:
https://github.com/codespell-project/codespell#using-a-config-file
Specifying options in a config file instead of command line options in
`.pre-commit-config.yaml` ensures codespell uses the same options when
run as pre-commit hook or from the command line in the repository root
directory.
@dependabot@joshmoore
Bump fsspec from 2023.10.0 to 2023.12.1 (zarr-developers#1600)
cf32382
* Bump fsspec from 2023.10.0 to 2023.12.1
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.10.0 to 2023.12.1.
- [Commits](fsspec/filesystem_spec@2023.10.0...2023.12.1)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update s3fs as well
* Fix s3fs
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@dstansby@d-v-b
Add type hints to zarr.create (zarr-developers#1536)
4d79cfc
* Add type hints to zarr.create
* Use protocol for MetaArray
* Use protocol for Synchronizer
* Fix Path typing
* Add release note
* Fix dim separator typing
* Ignore ... in coverage reporting
* Fix chunk typing
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dstansby@d-v-b
Remove unused mypy ignore comments (zarr-developers#1602)
12abd4e
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dependabot@jhamman
Bump actions/setup-python from 4.7.1 to 5.0.0 (zarr-developers#1605)
c2f5f00
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.1 to 5.0.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v4.7.1...v5.0.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@dependabot
Bump github/codeql-action from 2 to 3 (zarr-developers#1609)
490e0fe
Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3.
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](github/codeql-action@v2...v3)
---
updated-dependencies:
- dependency-name: github/codeql-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@pre-commit-ci@joshmoore
chore: update pre-commit hooks (zarr-developers#1448)
b5f79dd
* chore: update pre-commit hooks
updates:
- https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit
- [github.com/astral-sh/ruff-pre-commit: v0.0.224 → v0.1.8](astral-sh/ruff-pre-commit@v0.0.224...v0.1.8)
- [github.com/psf/black: 23.10.1 → 23.12.0](psf/black@23.10.1...23.12.0)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](codespell-project/codespell@v2.2.5...v2.2.6)
- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0)
- [github.com/pre-commit/mirrors-mypy: v1.3.0 → v1.7.1](pre-commit/mirrors-mypy@v1.3.0...v1.7.1)
* Attempt to fix ruff
* Use isinstance
---------
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1618)
e09ee14
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](astral-sh/ruff-pre-commit@v0.1.8...v0.1.9)
- [github.com/psf/black: 23.12.0 → 23.12.1](psf/black@23.12.0...23.12.1)
- [github.com/pre-commit/mirrors-mypy: v1.7.1 → v1.8.0](pre-commit/mirrors-mypy@v1.7.1...v1.8.0)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot@jhamman
Bump fsspec from 2023.12.1 to 2023.12.2 (zarr-developers#1606)
cd13989
* Bump fsspec from 2023.12.1 to 2023.12.2
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.12.1 to 2023.12.2.
- [Commits](fsspec/filesystem_spec@2023.12.1...2023.12.2)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update requirements_dev_optional.txt
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@dependabot
Bump pytest-doctestplus from 1.0.0 to 1.1.0 (zarr-developers#1619)
5fb420f
Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.0.0 to 1.1.0.
- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)
- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)
- [Commits](scientific-python/pytest-doctestplus@v1.0.0...v1.1.0)
---
updated-dependencies:
- dependency-name: pytest-doctestplus
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump pytest from 7.4.3 to 7.4.4 (zarr-developers#1622)
435a7ca
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1626)
6961fa9
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](astral-sh/ruff-pre-commit@v0.1.9...v0.1.11)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@jhamman
Create TEAM.md (zarr-developers#1628)
ee51835
@joshmoore@jhamman@jakirkham
Drop python 3.8 and numpy 1.20 (zarr-developers#1557)
c7d66b4
* Drop 3.8 and add 3.12
* Try removing line_profiler
* Also bump the minimal numpy to 1.21
* Drop 3.12 again
* Revert "Try removing line_profiler"
This reverts commit 837854b.
* Update release.rst
---------
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: jakirkham <jakirkham@gmail.com>
@jhamman
Add Norman Rzepka to core-dev team (zarr-developers#1630)
6ad464b
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1633)
a292dc4
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](astral-sh/ruff-pre-commit@v0.1.11...v0.1.13)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot@jhamman@joshmoore
Bump actions/download-artifact from 3 to 4 (zarr-developers#1611)
68c87bb
* Bump actions/download-artifact from 3 to 4
Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](actions/download-artifact@v3...v4)
---
updated-dependencies:
- dependency-name: actions/download-artifact
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
* Also bump upload-artifact
see https://github.com/actions/download-artifact?tab=readme-ov-file#breaking-changes
> Downloading artifacts that were created from action/upload-artifact@v3 and below are not supported.
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@jeffpeck10x@d-v-b@joshmoore
Update tutorial.rst to include section about accessing Zip Files on S3 (
1d56da0
zarr-developers#1615)
* Update tutorial.rst to include section about accessing Zip Files on S3
Per discussion here, add information about about accessing zip files on s3:
zarr-developers#1613
* Update release.rst
* Implement d-v-b's suggestions
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@jhamman@normanrz@sanketverma1704
doc(v3): add v3 roadmap and design document (zarr-developers#1583)
8ac8553
* doc(v3): add v3 roadmap and design document
* Update v3-roadmap-and-design.md
* updates after latest round of reviews
* Update v3-roadmap-and-design.md
Co-authored-by: Norman Rzepka <code@normanrz.com>
* Update v3-roadmap-and-design.md
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
---------
Co-authored-by: Norman Rzepka <code@normanrz.com>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1636)
a81db07
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](astral-sh/ruff-pre-commit@v0.1.13...v0.1.14)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@hoodmane@oeway
Fix zarr sync (zarr-developers#1663)
4f2ace4
This patch removes fasteners and disables zarr.sync which uses process and thread
Co-authored-by: Wei Ouyang <oeway007@gmail.com>
dependabotBotand others
added 19 commits
August 27, 2024 17:37
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
9e0b5e8
…evelopers#2129)
Bumps the requirements group with 3 updates in the / directory: [numpy](https://github.com/numpy/numpy), [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) and [azure-storage-blob](https://github.com/Azure/azure-sdk-for-python).
Updates `numpy` from 2.0.1 to 2.1.0
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.0.1...v2.1.0)
Updates `ipywidgets` from 8.1.3 to 8.1.5
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](jupyter-widgets/ipywidgets@8.1.3...8.1.5)
Updates `azure-storage-blob` from 12.16.0 to 12.21.0
- [Release notes](https://github.com/Azure/azure-sdk-for-python/releases)
- [Changelog](https://github.com/Azure/azure-sdk-for-python/blob/main/doc/esrp_release.md)
- [Commits](Azure/azure-sdk-for-python@azure-storage-blob_12.16.0...azure-storage-blob_12.21.0)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: ipywidgets
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: azure-storage-blob
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@jhamman
chore: bump minimum numpy version to 1.24 (zarr-developers#2127)
cc2cdee
* chore: bump minimum version to 1.24
* Update .github/workflows/python-package.yml
@dstansby
Remove un-needed package installs in CI (zarr-developers#2095)
cb2c669
@dependabot
Bump the actions group with 2 updates (zarr-developers#2146)
6656d1a
Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `actions/setup-python` from 5.1.1 to 5.2.0
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v5.1.1...v5.2.0)
Updates `pypa/gh-action-pypi-publish` from 1.9.0 to 1.10.0
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.9.0...v1.10.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump numpy from 2.1.0 to 2.1.1 in the requirements group (zarr-develo…
f1978dd
…pers#2151)
Bumps the requirements group with 1 update: [numpy](https://github.com/numpy/numpy).
Updates `numpy` from 2.1.0 to 2.1.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.0...v2.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@jhamman
chore(docs): update release notes ahead of 2.18.4 (zarr-developers#2152)
88b2100
@dependabot
Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions…
aa9da2b
… group (zarr-developers#2161)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.0 to 1.10.1
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.0...v1.10.1)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@sneakers-the-rat
[docs] remove primary sidebar from tutorial (zarr-developers#2142)
774f5b1
* remove primary sidebar from tutorial
* lint
@dependabot
Bump pytest from 8.3.2 to 8.3.3 in the requirements group (zarr-devel…
e1d98cd
…opers#2172)
Bumps the requirements group with 1 update: [pytest](https://github.com/pytest-dev/pytest).
Updates `pytest` from 8.3.2 to 8.3.3
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.2...8.3.3)
---
updated-dependencies:
- dependency-name: pytest
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
a011079
…s#2220)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.1 to 1.10.2
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.1...v1.10.2)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@jhamman
Update TEAM.md (zarr-developers#2227)
53f600b
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
a9abbe7
…evelopers#2284)
Bumps the requirements group with 3 updates in the / directory: [redis](https://github.com/redis/redis-py), [pymongo](https://github.com/mongodb/mongo-python-driver) and [h5py](https://github.com/h5py/h5py).
Updates `redis` from 5.0.8 to 5.1.0
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.0.8...v5.1.0)
Updates `pymongo` from 4.8.0 to 4.10.0
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.8.0...4.10.0)
Updates `h5py` from 3.11.0 to 3.12.1
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](h5py/h5py@3.11.0...3.12.1)
---
updated-dependencies:
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: h5py
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump pymongo from 4.10.0 to 4.10.1 in the requirements group (zarr-de…
559c2e3
…velopers#2288)
Bumps the requirements group with 1 update: [pymongo](https://github.com/mongodb/mongo-python-driver).
Updates `pymongo` from 4.10.0 to 4.10.1
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.10.0...4.10.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dstansby
Fix low contrast box titles (zarr-developers#2287) (zarr-developers#2292
6b9ab9e
)
@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
f175de4
…s#2304)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.2 to 1.10.3
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.2...v1.10.3)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump the requirements group with 2 updates (zarr-developers#2303)
a1dfd01
Bumps the requirements group with 2 updates: [numpy](https://github.com/numpy/numpy) and [redis](https://github.com/redis/redis-py).
Updates `numpy` from 2.1.1 to 2.1.2
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.1...v2.1.2)
Updates `redis` from 5.1.0 to 5.1.1
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.1.0...v5.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump numcodecs from 0.13.0 to 0.13.1 in the requirements group (zarr-…
eaf5d7a
…developers#2326)
Bumps the requirements group with 1 update: [numcodecs](https://github.com/zarr-developers/numcodecs).
Updates `numcodecs` from 0.13.0 to 0.13.1
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.13.0...v0.13.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@jhamman
Merge branch 'main' ofhttps://github.com/zarr-developers/zarr-python…
0e52e52
…into v3-main-sync-merge
@jhamman
remove zarr.types from v2
7bcb92b
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V3 main sync w/ mergemergeV3 main sync w/ mergeOct 11, 2024
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Nice, all of these look like good updates to make!
Comment threadv3-roadmap-and-design.md
@dstansbydstansbyOct 11, 2024

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Is this still useful to have around? Or worth removing at this point? Happy either way, just asking the question :)
@jhammanjhammanOct 11, 2024

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I'd like to keep it here for now. In the future, we may evolve this to be a roadmap page in the docs.
@jhamman
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merged commit ce5f53e
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Revert "V3 main sync w/ merge (#2335)"
50b8d89
This reverts commit ce5f53e.
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Revert "V3 main sync w/ merge (#2335)" (#2339)
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@jhamman@dstansby@janickm@DimitriPapadopoulos@joshmoore@jeffpeck10x@hoodmane@sanketverma1704@d-v-b@DahnJ@dcherian@itcarroll@rabernat@sneakers-the-rat

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V3 main sync w/ merge by jhamman · Pull Request #2335 · zarr-developers/zarr-python · GitHub
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This was not as bad as I thought it would be:
git checkout v3
git merge upstream/main
... # resolve conflicts
git commit

Supersedes #2330

Toward #2308
dependabotBotand others
added 30 commits
December 4, 2023 09:13
@dependabot
Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (zarr-develope…
ea90564
…rs#1586)
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.8.10...v1.8.11)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.1 (zarr-develo…
79e80b3
…pers#1587)
Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2.3.0 to 3.0.1.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](conda-incubator/setup-miniconda@v2.3.0...v3.0.1)
---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
dependency-type: direct:production
update-type: version-update:semver-major
...
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@janickm
* Cache result of FSStore._fsspec_installed (zarr-developers#1581)
25dbeed
Prevent runtime-overhead in doing this check multiple times
@dstansby
Bump version of black in pre-commit (zarr-developers#1559)
8579e21
@DimitriPapadopoulos@d-v-b
Use list comprehension where applicable (zarr-developers#1555)
54e31e9
Even if this is only a test, list comprehensions are faster than
repeatedly call append().
Also use tuple instead of list when possible.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dependabot@jhamman
Bump numcodecs from 0.11.0 to 0.12.1 (zarr-developers#1580)
7d2c9bf
Bumps [numcodecs](https://github.com/zarr-developers/numcodecs) from 0.11.0 to 0.12.1.
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.11.0...v0.12.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-minor
...
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@DimitriPapadopoulos@jhamman
Use format specification mini-language to format string (zarr-develop…
10dee6b
…ers#1558)
Co-authored-by: Joe Hamman <joe@earthmover.io>
@DimitriPapadopoulos@d-v-b@jhamman
Single startswith() call instead of multiple ones (zarr-developers#1556)
40a6e81
It's faster and probably more readable.
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Joe Hamman <joe@earthmover.io>
@dependabot@jhamman
Bump pymongo from 4.5.0 to 4.6.1 (zarr-developers#1585)
5954ff9
Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.5.0 to 4.6.1.
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.5.0...4.6.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
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@DimitriPapadopoulos
Move codespell options around (zarr-developers#1196)
6ad7b0e
Starting with codespell 2.2.2, options can be specified in
`pyrpoject.toml` in addition to `setup.cfg`:
https://github.com/codespell-project/codespell#using-a-config-file
Specifying options in a config file instead of command line options in
`.pre-commit-config.yaml` ensures codespell uses the same options when
run as pre-commit hook or from the command line in the repository root
directory.
@dependabot@joshmoore
Bump fsspec from 2023.10.0 to 2023.12.1 (zarr-developers#1600)
cf32382
* Bump fsspec from 2023.10.0 to 2023.12.1
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.10.0 to 2023.12.1.
- [Commits](fsspec/filesystem_spec@2023.10.0...2023.12.1)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update s3fs as well
* Fix s3fs
---------
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@dstansby@d-v-b
Add type hints to zarr.create (zarr-developers#1536)
4d79cfc
* Add type hints to zarr.create
* Use protocol for MetaArray
* Use protocol for Synchronizer
* Fix Path typing
* Add release note
* Fix dim separator typing
* Ignore ... in coverage reporting
* Fix chunk typing
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dstansby@d-v-b
Remove unused mypy ignore comments (zarr-developers#1602)
12abd4e
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
@dependabot@jhamman
Bump actions/setup-python from 4.7.1 to 5.0.0 (zarr-developers#1605)
c2f5f00
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.1 to 5.0.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v4.7.1...v5.0.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-major
...
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@dependabot
Bump github/codeql-action from 2 to 3 (zarr-developers#1609)
490e0fe
Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3.
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](github/codeql-action@v2...v3)
---
updated-dependencies:
- dependency-name: github/codeql-action
dependency-type: direct:production
update-type: version-update:semver-major
...
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@pre-commit-ci@joshmoore
chore: update pre-commit hooks (zarr-developers#1448)
b5f79dd
* chore: update pre-commit hooks
updates:
- https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit
- [github.com/astral-sh/ruff-pre-commit: v0.0.224 → v0.1.8](astral-sh/ruff-pre-commit@v0.0.224...v0.1.8)
- [github.com/psf/black: 23.10.1 → 23.12.0](psf/black@23.10.1...23.12.0)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](codespell-project/codespell@v2.2.5...v2.2.6)
- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0)
- [github.com/pre-commit/mirrors-mypy: v1.3.0 → v1.7.1](pre-commit/mirrors-mypy@v1.3.0...v1.7.1)
* Attempt to fix ruff
* Use isinstance
---------
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1618)
e09ee14
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](astral-sh/ruff-pre-commit@v0.1.8...v0.1.9)
- [github.com/psf/black: 23.12.0 → 23.12.1](psf/black@23.12.0...23.12.1)
- [github.com/pre-commit/mirrors-mypy: v1.7.1 → v1.8.0](pre-commit/mirrors-mypy@v1.7.1...v1.8.0)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot@jhamman
Bump fsspec from 2023.12.1 to 2023.12.2 (zarr-developers#1606)
cd13989
* Bump fsspec from 2023.12.1 to 2023.12.2
Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.12.1 to 2023.12.2.
- [Commits](fsspec/filesystem_spec@2023.12.1...2023.12.2)
---
updated-dependencies:
- dependency-name: fsspec
dependency-type: direct:development
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
* Update requirements_dev_optional.txt
---------
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@dependabot
Bump pytest-doctestplus from 1.0.0 to 1.1.0 (zarr-developers#1619)
5fb420f
Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.0.0 to 1.1.0.
- [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases)
- [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst)
- [Commits](scientific-python/pytest-doctestplus@v1.0.0...v1.1.0)
---
updated-dependencies:
- dependency-name: pytest-doctestplus
dependency-type: direct:development
update-type: version-update:semver-minor
...
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@dependabot
Bump pytest from 7.4.3 to 7.4.4 (zarr-developers#1622)
435a7ca
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1626)
6961fa9
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](astral-sh/ruff-pre-commit@v0.1.9...v0.1.11)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@jhamman
Create TEAM.md (zarr-developers#1628)
ee51835
@joshmoore@jhamman@jakirkham
Drop python 3.8 and numpy 1.20 (zarr-developers#1557)
c7d66b4
* Drop 3.8 and add 3.12
* Try removing line_profiler
* Also bump the minimal numpy to 1.21
* Drop 3.12 again
* Revert "Try removing line_profiler"
This reverts commit 837854b.
* Update release.rst
---------
Co-authored-by: Joe Hamman <joe@earthmover.io>
Co-authored-by: jakirkham <jakirkham@gmail.com>
@jhamman
Add Norman Rzepka to core-dev team (zarr-developers#1630)
6ad464b
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1633)
a292dc4
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](astral-sh/ruff-pre-commit@v0.1.11...v0.1.13)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@dependabot@jhamman@joshmoore
Bump actions/download-artifact from 3 to 4 (zarr-developers#1611)
68c87bb
* Bump actions/download-artifact from 3 to 4
Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](actions/download-artifact@v3...v4)
---
updated-dependencies:
- dependency-name: actions/download-artifact
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
* Also bump upload-artifact
see https://github.com/actions/download-artifact?tab=readme-ov-file#breaking-changes
> Downloading artifacts that were created from action/upload-artifact@v3 and below are not supported.
---------
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@jeffpeck10x@d-v-b@joshmoore
Update tutorial.rst to include section about accessing Zip Files on S3 (
1d56da0
zarr-developers#1615)
* Update tutorial.rst to include section about accessing Zip Files on S3
Per discussion here, add information about about accessing zip files on s3:
zarr-developers#1613
* Update release.rst
* Implement d-v-b's suggestions
---------
Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>
@jhamman@normanrz@sanketverma1704
doc(v3): add v3 roadmap and design document (zarr-developers#1583)
8ac8553
* doc(v3): add v3 roadmap and design document
* Update v3-roadmap-and-design.md
* updates after latest round of reviews
* Update v3-roadmap-and-design.md
Co-authored-by: Norman Rzepka <code@normanrz.com>
* Update v3-roadmap-and-design.md
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
---------
Co-authored-by: Norman Rzepka <code@normanrz.com>
Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>
@pre-commit-ci
chore: update pre-commit hooks (zarr-developers#1636)
a81db07
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](astral-sh/ruff-pre-commit@v0.1.13...v0.1.14)
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@hoodmane@oeway
Fix zarr sync (zarr-developers#1663)
4f2ace4
This patch removes fasteners and disables zarr.sync which uses process and thread
Co-authored-by: Wei Ouyang <oeway007@gmail.com>
dependabotBotand others
added 19 commits
August 27, 2024 17:37
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
9e0b5e8
…evelopers#2129)
Bumps the requirements group with 3 updates in the / directory: [numpy](https://github.com/numpy/numpy), [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) and [azure-storage-blob](https://github.com/Azure/azure-sdk-for-python).
Updates `numpy` from 2.0.1 to 2.1.0
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.0.1...v2.1.0)
Updates `ipywidgets` from 8.1.3 to 8.1.5
- [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases)
- [Commits](jupyter-widgets/ipywidgets@8.1.3...8.1.5)
Updates `azure-storage-blob` from 12.16.0 to 12.21.0
- [Release notes](https://github.com/Azure/azure-sdk-for-python/releases)
- [Changelog](https://github.com/Azure/azure-sdk-for-python/blob/main/doc/esrp_release.md)
- [Commits](Azure/azure-sdk-for-python@azure-storage-blob_12.16.0...azure-storage-blob_12.21.0)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: ipywidgets
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: azure-storage-blob
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
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@jhamman
chore: bump minimum numpy version to 1.24 (zarr-developers#2127)
cc2cdee
* chore: bump minimum version to 1.24
* Update .github/workflows/python-package.yml
@dstansby
Remove un-needed package installs in CI (zarr-developers#2095)
cb2c669
@dependabot
Bump the actions group with 2 updates (zarr-developers#2146)
6656d1a
Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `actions/setup-python` from 5.1.1 to 5.2.0
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v5.1.1...v5.2.0)
Updates `pypa/gh-action-pypi-publish` from 1.9.0 to 1.10.0
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.9.0...v1.10.0)
---
updated-dependencies:
- dependency-name: actions/setup-python
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-minor
dependency-group: actions
...
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@dependabot
Bump numpy from 2.1.0 to 2.1.1 in the requirements group (zarr-develo…
f1978dd
…pers#2151)
Bumps the requirements group with 1 update: [numpy](https://github.com/numpy/numpy).
Updates `numpy` from 2.1.0 to 2.1.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.0...v2.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@jhamman
chore(docs): update release notes ahead of 2.18.4 (zarr-developers#2152)
88b2100
@dependabot
Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 in the actions…
aa9da2b
… group (zarr-developers#2161)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.0 to 1.10.1
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.0...v1.10.1)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
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@sneakers-the-rat
[docs] remove primary sidebar from tutorial (zarr-developers#2142)
774f5b1
* remove primary sidebar from tutorial
* lint
@dependabot
Bump pytest from 8.3.2 to 8.3.3 in the requirements group (zarr-devel…
e1d98cd
…opers#2172)
Bumps the requirements group with 1 update: [pytest](https://github.com/pytest-dev/pytest).
Updates `pytest` from 8.3.2 to 8.3.3
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.3.2...8.3.3)
---
updated-dependencies:
- dependency-name: pytest
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
a011079
…s#2220)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.1 to 1.10.2
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.1...v1.10.2)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
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@jhamman
Update TEAM.md (zarr-developers#2227)
53f600b
@dependabot
Bump the requirements group across 1 directory with 3 updates (zarr-d…
a9abbe7
…evelopers#2284)
Bumps the requirements group with 3 updates in the / directory: [redis](https://github.com/redis/redis-py), [pymongo](https://github.com/mongodb/mongo-python-driver) and [h5py](https://github.com/h5py/h5py).
Updates `redis` from 5.0.8 to 5.1.0
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.0.8...v5.1.0)
Updates `pymongo` from 4.8.0 to 4.10.0
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.8.0...4.10.0)
Updates `h5py` from 3.11.0 to 3.12.1
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](h5py/h5py@3.11.0...3.12.1)
---
updated-dependencies:
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
- dependency-name: h5py
dependency-type: direct:development
update-type: version-update:semver-minor
dependency-group: requirements
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump pymongo from 4.10.0 to 4.10.1 in the requirements group (zarr-de…
559c2e3
…velopers#2288)
Bumps the requirements group with 1 update: [pymongo](https://github.com/mongodb/mongo-python-driver).
Updates `pymongo` from 4.10.0 to 4.10.1
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.10.0...4.10.1)
---
updated-dependencies:
- dependency-name: pymongo
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dstansby
Fix low contrast box titles (zarr-developers#2287) (zarr-developers#2292
6b9ab9e
)
@dependabot
Bump pypa/gh-action-pypi-publish in the actions group (zarr-developer…
f175de4
…s#2304)
Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish).
Updates `pypa/gh-action-pypi-publish` from 1.10.2 to 1.10.3
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](pypa/gh-action-pypi-publish@v1.10.2...v1.10.3)
---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
dependency-type: direct:production
update-type: version-update:semver-patch
dependency-group: actions
...
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@dependabot
Bump the requirements group with 2 updates (zarr-developers#2303)
a1dfd01
Bumps the requirements group with 2 updates: [numpy](https://github.com/numpy/numpy) and [redis](https://github.com/redis/redis-py).
Updates `numpy` from 2.1.1 to 2.1.2
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.1.1...v2.1.2)
Updates `redis` from 5.1.0 to 5.1.1
- [Release notes](https://github.com/redis/redis-py/releases)
- [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES)
- [Commits](redis/redis-py@v5.1.0...v5.1.1)
---
updated-dependencies:
- dependency-name: numpy
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
- dependency-name: redis
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump numcodecs from 0.13.0 to 0.13.1 in the requirements group (zarr-…
eaf5d7a
…developers#2326)
Bumps the requirements group with 1 update: [numcodecs](https://github.com/zarr-developers/numcodecs).
Updates `numcodecs` from 0.13.0 to 0.13.1
- [Release notes](https://github.com/zarr-developers/numcodecs/releases)
- [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst)
- [Commits](zarr-developers/numcodecs@v0.13.0...v0.13.1)
---
updated-dependencies:
- dependency-name: numcodecs
dependency-type: direct:development
update-type: version-update:semver-patch
dependency-group: requirements
...
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@jhamman
Merge branch 'main' ofhttps://github.com/zarr-developers/zarr-python…
0e52e52
…into v3-main-sync-merge
@jhamman
remove zarr.types from v2
7bcb92b
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mentioned this pull request
Oct 11, 2024
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@jhammanjhamman
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V3 main sync w/ mergemergeV3 main sync w/ mergeOct 11, 2024
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Nice, all of these look like good updates to make!
Comment threadv3-roadmap-and-design.md
@dstansbydstansbyOct 11, 2024

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Is this still useful to have around? Or worth removing at this point? Happy either way, just asking the question :)
@jhammanjhammanOct 11, 2024

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I'd like to keep it here for now. In the future, we may evolve this to be a roadmap page in the docs.
@jhamman
jhamman
merged commit ce5f53e
into
zarr-developers:v3Oct 11, 2024
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@jhamman
Revert "V3 main sync w/ merge (#2335)"
50b8d89
This reverts commit ce5f53e.
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@jhamman
Revert "V3 main sync w/ merge (#2335)" (#2339)
124640a
This reverts commit ce5f53e.

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@jhamman@dstansby@janickm@DimitriPapadopoulos@joshmoore@jeffpeck10x@hoodmane@sanketverma1704@d-v-b@DahnJ@dcherian@itcarroll@rabernat@sneakers-the-rat