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⚡ Bolt: [performance improvement] Cache compiled ConText lexicons - #23

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⚡ Bolt: [performance improvement] Cache compiled ConText lexicons#23
zrt219 wants to merge 1 commit into
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bolt-perf-context-lexicon-cache-13188363360794922243

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💡 What: Applied @functools.lru_cache to the _compiled_context_lexicon function in openmed/openmed/clinical/context.py.
🎯 Why: The function dynamically compiled a large series of complex regular expressions for matching ConText temporal, negation, and uncertainty cues. Because this function was called for every individual NLP span processed, the repeated regex compilation created a massive performance bottleneck.
📊 Impact: Reduced the time required to process contextual axes for NLP spans by approximately 40x (e.g. from ~0.88s to ~0.02s over 100 benchmark iterations on a mock document).
🔬 Measurement: Run the unit test suite (uv run pytest tests/unit/clinical/test_context_*.py) to verify behavior remains deterministic and functionally identical.


PR created automatically by Jules for task 13188363360794922243 started by @zrt219

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Co-authored-by: zrt219 <199104500+zrt219@users.noreply.github.com>
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zrt-bionemoReadyReadyPreview, CommentJul 21, 2026 5:34pm

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