Brent Lab

checseq slurm pipeline based on Mahendrawada 2025

A shiny app to explore a collection of yeast binding and perturbation data collected by the brent lab

A Python package for Transcription Factor Binding and Perturbation (TFBP) modeling that analyzes relationships between transcription factor binding and gene expression perturbations using LASSO

Data, scripts, references for reproducibility of METANets

Code to create figures for the tfbpmodeling paper

A TF network map for cryptococcus

Dual Threshold Optimization compares two ranked lists of features (e.g. genes) to determine the rank threshold for each list that minimizes the hypergeometric p-value of the overlap of features. It then calculates a permutation based empirical p-value and an FDR