CellProfiler

CellProfiler-plugins Public

Community-contributed and experimental CellProfiler modules.

Python 77 74 24 14 Updated Jul 22, 2026

CellProfiler Public

An open-source application for biological image analysis

Python 1,129 421 279 29 Updated Jul 7, 2026

tutorials Public

CellProfiler tutorial pipelines and images

Jupyter Notebook 104BSD-3-Clause 88 3 1 Updated May 19, 2026

python-javabridge Public Forked from LeeKamentsky/python-javabridge

Python wrapper for the Java Native Interface

Python 24 63 13 2 Updated Apr 8, 2026

core Public

Core classes and components used by CellProfiler

Python 7 27 0 1 Updated Apr 2, 2026

distribution Public

Everything needed to build CellProfiler for your favorite environment.

Python 4 6 13 0 Updated Mar 6, 2026

prokaryote Public

CellProfiler’s Java dependencies

Java 3GPL-3.0 11 3 2 Updated Feb 24, 2026

centrosome Public

An open source image processing library

Python 20 38 30 1 Updated Jan 14, 2026

CellProfiler-Analyst Public

Open-source software for exploring and analyzing large, high-dimensional image-derived data.

Python 170 75 71 1 Updated Jul 21, 2025

python-bioformats Public

Read and write life sciences file formats

Python 143 47 72 5 Updated Jun 12, 2025

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