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Max supported python version?

Status: Open.

#324In ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit;

· bbimber opened on Jan 25, 2026

Do not include dot character in track names

bug

Important

Status: Open.

#323In ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit;

· diekhans opened on May 25, 2025

CAT doesn't carry over GENCODE tag information

Status: Open.

#322In ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit;

· diekhans opened on Jan 13, 2025

Hello! I can't run it even on test data

Status: Open.

#321In ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit;

· VasyaSokolov opened on Jan 13, 2025

CAT should handle internal exon expansions

enhancement

Status: Open.

#320In ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit;

· diekhans opened on Aug 1, 2024

transMapPsl doesn't show base mismatches in browser

Status: Open.

#319In ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit;

· diekhans opened on Jun 19, 2024

Unable to run annotation pipeline. Target h2tg000040l block 10438982-10444550 exceeds sequence length 10441754

Status: Open.

#318In ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit;

· smkumaill opened on Apr 13, 2024

CAT can't find gene duplications

Status: Open.

#317In ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit;

· DhakadPankaj opened on Mar 30, 2024

Concensue bigGenePred column name incorrect

Status: Open.

#315In ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit;

· diekhans opened on Mar 9, 2024

CAT should not use Ensembl transcript names

Status: Open.

#309In ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit;

· diekhans opened on Feb 23, 2024

CAT consensus track needs filters

Status: Open.

#308In ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit;

· diekhans opened on Feb 23, 2024

Got exit code 1 (indicating failure) from job _toil_worker cgp file:/Comparative-Annotation-Toolkit/Darmor_A01_qwe/toil/augustus_cgp/jobStore kind-cgp/instance-cf_rpblx.

Status: Open.

#307In ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit;

· jwli-code opened on Jan 8, 2024