Deep Medical Imaging Lab (PI Reuter)

Neuro Lesion Inpainting Tool (neuroLIT / FastSurfer-LIT) for lesion inpainting e.g. for whole brain segmentation and cortical surface reconstruction in the presence of tumor, surgical cavities or other abnormalities

HIPSTA - a python package for hippocampal shape and thickness analysis

PyTorch implementation of FastSurferCNN

NeuroCade brings neuroimaging workflows into one local, researcher-friendly workspace: natively run neuroimaging tools like FastSurfer, track cases and analysis outputs. All functions are run with no code, but via the click of a button or an AI assistant.

Robust Image Registration Using PyTorch Backpropagation

A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data

A python-only derivative of the original BrainPrint scripts

Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)

Deep Medical Imaging Lab Webpage

Publication-quality OpenGL surface renderer with overlays — off-screen, Jupyter, and GUI support