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EMC-Viroscience

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EMC-Viroscience.github.ioEMC-Viroscience.github.ioPublic
Repo for the EMC-Viroscience Quarto website
Python 1

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Showing 10 of 12 repositories

EMC-Viroscience.github.io Public
Repo for the EMC-Viroscience Quarto website
EMC-Viroscience/EMC-Viroscience.github.io's past year of commit activity
Python 0 1 0 0 Updated Aug 12, 2026
illumina-metagenomic-analysis-manual Public
This is a manual for viral metagenomic data analysis of Illumina short reads
EMC-Viroscience/illumina-metagenomic-analysis-manual's past year of commit activity
Python 2GPL-3.0 1 0 0 Updated Aug 12, 2026
nanopore-amplicon-analysis-manual Public
This is a manual for viral amplicon data analysis of Nanopore long reads
EMC-Viroscience/nanopore-amplicon-analysis-manual's past year of commit activity
Python 2GPL-3.0 1 0 0 Updated May 4, 2026
bird-surveillance-dashboard Public
Source code for the bird surveillance dashboard based on the Pathogen Portal data.
EMC-Viroscience/bird-surveillance-dashboard's past year of commit activity
0MIT 1 0 0 Updated Nov 20, 2025
SARS-CoV-2_submission Public Forked from divprasad/SARS-CoV-2_submission
EMC-Viroscience/SARS-CoV-2_submission's past year of commit activity
Python 0MIT 1 0 0 Updated Jul 18, 2025
Genomic-monitoring-mpox-in-Burundi Public Forked from BOM86/Genomic-monitoring-mpox-in-Burundi
Genomic monitoring and tracking of mpox virus Clade Ib after the introduction into Burundi at the end of July until mid-September, 2024
EMC-Viroscience/Genomic-monitoring-mpox-in-Burundi's past year of commit activity
0 1 0 0 Updated Apr 7, 2025
Worp_etal_Global_Sewage_Virome Public Forked from nathalieworp/Worp_etal_Global_Sewage_Virome
snakemake workflow and scripts for global urban virome wastewater study (Manuscript in submission Worp et al, 2025)
EMC-Viroscience/Worp_etal_Global_Sewage_Virome's past year of commit activity
Python 0Apache-2.0 1 0 0 Updated Mar 19, 2025
USUV_submission Public Forked from divprasad/USUV_submission
Usutu virus submission made easy—this structured template is designed for programmatically submitting raw read samples, runs, and experiment metadata to ENA. Converts tables to XML, supports adding or modifying metadata, retrieves submission receipts, and includes metadata accessions.
EMC-Viroscience/USUV_submission's past year of commit activity
Python 0MIT 1 0 0 Updated Feb 12, 2025
updated_illumina_workflow Public Forked from divprasad/updated_illumina_workflow
A Snakemake workflow for processing Illumina sequencing data, tested and validated on wastewater metagenomics.
EMC-Viroscience/updated_illumina_workflow's past year of commit activity
Python 0Apache-2.0 1 0 0 Updated Feb 6, 2025
Rashidi_et_al-2024-COVID19-brain-apoptosis Public Forked from HerpeslabNL/Rashidi_et_al-2024-COVID19-brain-apoptosis
Scripts and Data for Rashidi et al 2024 Manuscript
EMC-Viroscience/Rashidi_et_al-2024-COVID19-brain-apoptosis's past year of commit activity
ImageJ Macro 0 1 0 0 Updated Mar 5, 2024

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