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1. EMC-Viroscience/EMC-Viroscience.github.ioEMC-Viroscience/EMC-Viroscience.github.ioPublic

   Repo for the EMC-Viroscience Quarto website

   Python 1

2. EMC-Viroscience/illumina-metagenomic-analysis-manualEMC-Viroscience/illumina-metagenomic-analysis-manualPublic

   This is a manual for viral metagenomic data analysis of Illumina short reads

   Python 2 1

3. EMC-Viroscience/nanopore-amplicon-analysis-manualEMC-Viroscience/nanopore-amplicon-analysis-manualPublic

   This is a manual for viral amplicon data analysis of Nanopore long reads

   Python 2 1

4. VirBenchVirBenchPublic

   VirBench (Viral Assembly Benchmark) is a pipeline made to compare metagenomic assemblers with viral nanopore reads.

   Python 3

5. EMC-Viroscience/bird-surveillance-dashboardEMC-Viroscience/bird-surveillance-dashboardPublic

   Source code for the bird surveillance dashboard based on the Pathogen Portal data.

   1

6. pcr-dropout-checkerpcr-dropout-checkerPublic

   TypeScript