IARC bioinformatics platform

methylkey Public

R 3GPL-3.0 3 0 0 Updated Sep 4, 2026

RNAseq-nf Public

RNAseq analysis pipeline

HTML 28GPL-3.0 10 4 0 Updated Aug 5, 2026

BQSR-nf Public

Nextflow script for base quality score recalibration of bam files using GATK

Nextflow 0GPL-3.0 1 2 0 Updated Aug 3, 2026

MS_sigvar Public

Repository with code used to produce the figures from Morrison et al. doi.org/10.1101/2023.11.23.23298821

HTML 0GPL-3.0 0 0 0 Updated Jul 22, 2026

CTInfer Public

CTInfer (Compound Target Inference Tool) is a desktop application developed for IARC to automatically identify proteins inhibited by chemical compounds.

Python 0GPL-3.0 0 0 0 Updated Jul 3, 2026

PACMOS Public

R 2 0 0 0 Updated Jun 26, 2026

pavoa-nf Public

Pipeline for variant detection. Preprocessing Alignment, Variant calling, Optimization, Annotation

Nextflow 2GPL-3.0 0 0 0 Updated Jun 11, 2026

MS_lungNENomics Public

Repository with scripts from the lungNENomics manuscript

HTML 0GPL-3.0 1 0 0 Updated Jun 5, 2026

mutacet_2026 Public

Scripts for mutacet publication, 2026

Python 0GPL-3.0 0 0 0 Updated May 8, 2026

bam2cram-nf Public

A repository to convert BAM->CRAM files

Nextflow 0MIT 1 0 1 Updated Apr 23, 2026

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