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1. mutspec_annot mutspec_annotPublic

   Forked from IARCbioinfo/gama_annot-nf

   Annotate VCF files with Annovar

   R

2. RNAseq-nf RNAseq-nfPublic

   Forked from IARCbioinfo/RNAseq-nf

   RNAseq analysis pipeline

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3. Methylation_analysis_scripts Methylation_analysis_scriptsPublic

   Forked from IARCbioinfo/Methylation_analysis_scripts

   R scripts for Illumina array analyses

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4. abra-nf abra-nfPublic

   Forked from IARCbioinfo/abra-nf

   Nextflow pipeline for ABRA (Assembly Based ReAligner)

   Nextflow

5. BQSR-nf BQSR-nfPublic

   Forked from IARCbioinfo/BQSR-nf

   Nextflow script for base quality score recalibration of bam files using GATK

   Nextflow

6. RNAseq-transcript-nf RNAseq-transcript-nfPublic

   Forked from IARCbioinfo/RNAseq-transcript-nf

   Transcript-level RNA-seq analysis

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