SchriderLab

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1. Timesweeper TimesweeperPublic

   Python package for detecting positive selective sweeps using time-series genomics sampling data.

   Python 21 2

2. Tree_learning Tree_learningPublic

   Code for accurate inference of tree topologies from multiple sequence alignments using deep learning

   R 10 1

3. TEforest TEforestPublic

   Finding TEs with short-read data using random forests

   R 9 1

4. drosophila_phylogeny drosophila_phylogenyPublic

   Pipeline overview and code (including BLT-DCT program) for widespread introgression across a phylogeny of 155 Drosophila genomes

   R 8 1

5. timesweeper-experiments timesweeper-experimentsPublic

   Repo for experiments for the TimeSweeper manuscript.

   Jupyter Notebook 6 1

6. introNets introNetsPublic

   Python 5 1