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Release v1.1.0 - #318

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briandrawert merged 145 commits into
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Aug 15, 2022
Merged

Release v1.1.0#318
briandrawert merged 145 commits into
mainfrom
staging

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@BryanRumsey

@BryanRumseyBryanRumsey commented Aug 15, 2022

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Bug Fixes

closes#289
closes#291
closes#292
closes#293
closes#294
closes#295
closes#296
closes#297
closes#298
closes#299
closes#306
closes#309
closes#310
closes#313

briandrawertand others added 30 commits July 25, 2022 13:03
@briandrawert
Closes#289
af2585c
@BryanRumsey
Fixed defaults for Domain.add_point.closes#299.
4fb7f1e
@BryanRumsey
Added a class for cominatory geometry.
0007cae
@BryanRumsey
Added numpy.bool_ to geometry.inside return type check.
1052431
@BryanRumsey
Added the new geometry to the import sturcture.
de83919
@BryanRumsey
Updated cylinder demo to use new geometry for middle type.
a2bc83f
@BryanRumsey
Merge pull request#290from StochSS/fix_289
a8a17a6
Closes#289
@BryanRumsey
Updated version to v1.1.0
31615f6
@BryanRumsey
Added a lattice error class.
e5668f7
@BryanRumsey
Added the lattice module.
19aa6ab
@BryanRumsey
Added a base class for lattices.
abcd36e
@BryanRumsey
Added missing kwargs arg to apply.
0f4a5fe
@BryanRumsey
Added the cartesian lattice.
c7e9b0d
@BryanRumsey
Added checks to apply function to ensure proper args are passed. Adde…
6c45d5f
…d spherical lattice.
@BryanRumsey
Bug fixes.
628eb00
@BryanRumsey
Added the cartesian and spherical lattices to the import structure.
9187fc7
@BryanRumsey
Added 2D support to the cartesian lattice.
40383de
@BryanRumsey
Added validation checks to combinatory geometry.
78086d8
@BryanRumsey
Merge branch 'geometry-combinations' ofhttps://github.com/StochSS/Sp…
bd1fa75
…atialPy into lattice
@BryanRumsey
Added cylindrical lattice.
165f82c
@BryanRumsey
Added the cylindrical lattice to the import structure.
81a1014
@BryanRumsey
Bug fixes.
3db8f5e
@BryanRumsey
Merge branch 'geometry-combinations' ofhttps://github.com/StochSS/Sp…
0ffc721
…atialPy into lattice
@BryanRumsey
Fixed the get bounding box function.
6cf9c8a
@BryanRumsey
Added function to update the domain limits after all particles have b…
19668bc
…een added.
@BryanRumsey
Updated the get bounding box function.
afa0ba2
@BryanRumsey
Added the XMLMesh lattice.
b20e2a2
@BryanRumsey
Added the XMLMesh to the import stucture.
762fc7e
@BryanRumsey
More bug fixes.
bb5b312
@BryanRumsey
Merge branch 'geometry-combinations' ofhttps://github.com/StochSS/Sp…
6ed15d8
…atialPy into lattice
BryanRumseyand others added 26 commits August 12, 2022 15:50
@BryanRumsey
Added calculations for particle volume to lattices.
7267c40
@BryanRumsey
Merge branch 'review-changes' ofhttps://github.com/StochSS/SpatialPy…
dc28507
…into pre_v1.1_staging
@BryanRumsey
bug squashing.
7352634
@BryanRumsey
Merge branch 'review-changes' ofhttps://github.com/StochSS/SpatialPy…
324fbd7
…into pre_v1.1_staging
@BryanRumsey
Added a 3d cylinder example using lattices and actions.
4ce3ad3
@BryanRumsey
Fixed geometries.
502aeb5
@briandrawert
converting Cylinder Demo to ode_propensity_functions, correcting bug
9c2c5b8
@briandrawert
Merge branch 'pre_v1.1_staging' of github.com:stochss/SpatialPy into …
3309ef8
…pre_v1.1_staging
@briandrawert
Merge branch 'pre_v1.1_staging' of github.com:stochss/SpatialPy into …
c6d5573
…update_docs_v1.1
@briandrawert
updating docs
e316deb
@BryanRumsey
cast all rounded values to ints.
65e50a8
@BryanRumsey
Fixed issue with get bounding box.
4651f16
@briandrawert
Merge pull request#300from StochSS/hotfix-add-point-defaults
a454497
HOTFIX: `Domain.add_point` defaults
@briandrawert
Merge pull request#301from StochSS/geometry-combinations
a61b006
Combinatory Geometry
@briandrawert
Merge pull request#303from StochSS/lattice
471db1a
Lattice Module
@briandrawert
Merge pull request#304from StochSS/transformations
13e06e1
Transformations Module
@briandrawert
Merge pull request#305from StochSS/actions-and-apply-funcs
f180410
Domain Actions
@briandrawert
Merge pull request#308from StochSS/examples-with-actions
1e95f62
Examples with actions
@briandrawert
Merge pull request#311from StochSS/reflect-transform
712c334
Reflection Transformation
@briandrawert
Merge pull request#312from StochSS/scaling-transform
900bf1f
Scaling Transformations
@briandrawert
Merge pull request#316from StochSS/pre_v1.1_staging
55e6535
Pre v1.1 staging
@briandrawert
Merge pull request#317from StochSS/review-changes
641bafa
Review changes
@briandrawert
Merge pull request#315from StochSS/update_docs_v1.1
b63e34b
Update docs for v1.1
@briandrawert
updated docs
0276e48
@BryanRumsey
Fixed issue with type_id checks.
137af52
@briandrawert
Merge pull request#302from StochSS/develop
2b77d2f
Stage Release v1.1.0
@BryanRumseyBryanRumsey added this to the 1.1.0 Release milestone Aug 15, 2022
@briandrawert
briandrawert merged commit 7da3e17 into mainAug 15, 2022
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