[NET-314] Add scaling and colormap changes to chords, FC plot, and edge plot - #165

Merged
pollaro merged 16 commits into
masterfrom
NET314_chordscale
Jul 30, 2026
Merged

[NET-314] Add scaling and colormap changes to chords, FC plot, and edge plot#165
pollaro merged 16 commits into
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NET314_chordscale

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This is messy because it's multiple PRs cherry-picked and then brought together.

  1. Add nla.gfx.colorSelector to create a colormap modal for FC plot, edge plot, and chords
  2. Add nla.gfx.scaleSelector for the same only for scale
  3. Add an input parameter to MatrixPlot for if the plot is being generated within an app window (the network result) or not
  4. Add color choices to the chord plots
  5. Add parameter changing options to all the chord options
  6. Add colormap, upper, and lower values to chord properties
  7. Add functional wrappers for scale changes to MatrixPlot and ChordPlotter (poor naming there, way to go code-monkey) to take changes from pop-up modals and apply

@pollaro
pollaro merged commit ebd56c9 into masterJul 30, 2026
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@pollaro@actions-user
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
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[NET-314] Add scaling and colormap changes to chords, FC plot, and edge plot - #165

Merged
pollaro merged 16 commits into
masterfrom
NET314_chordscale
Jul 30, 2026
Merged

[NET-314] Add scaling and colormap changes to chords, FC plot, and edge plot#165
pollaro merged 16 commits into
masterfrom
NET314_chordscale

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@pollaro

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This is messy because it's multiple PRs cherry-picked and then brought together.

  1. Add nla.gfx.colorSelector to create a colormap modal for FC plot, edge plot, and chords
  2. Add nla.gfx.scaleSelector for the same only for scale
  3. Add an input parameter to MatrixPlot for if the plot is being generated within an app window (the network result) or not
  4. Add color choices to the chord plots
  5. Add parameter changing options to all the chord options
  6. Add colormap, upper, and lower values to chord properties
  7. Add functional wrappers for scale changes to MatrixPlot and ChordPlotter (poor naming there, way to go code-monkey) to take changes from pop-up modals and apply

@pollaro
pollaro merged commit ebd56c9 into masterJul 30, 2026
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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix"); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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[NET-314] Add scaling and colormap changes to chords, FC plot, and edge plot - #165

Merged
pollaro merged 16 commits into
masterfrom
NET314_chordscale
Jul 30, 2026
Merged

[NET-314] Add scaling and colormap changes to chords, FC plot, and edge plot#165
pollaro merged 16 commits into
masterfrom
NET314_chordscale

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@pollaro

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This is messy because it's multiple PRs cherry-picked and then brought together.

  1. Add nla.gfx.colorSelector to create a colormap modal for FC plot, edge plot, and chords
  2. Add nla.gfx.scaleSelector for the same only for scale
  3. Add an input parameter to MatrixPlot for if the plot is being generated within an app window (the network result) or not
  4. Add color choices to the chord plots
  5. Add parameter changing options to all the chord options
  6. Add colormap, upper, and lower values to chord properties
  7. Add functional wrappers for scale changes to MatrixPlot and ChordPlotter (poor naming there, way to go code-monkey) to take changes from pop-up modals and apply

@pollaro
pollaro merged commit ebd56c9 into masterJul 30, 2026
2 checks passed
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@pollaro@actions-user
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

[NET-314] Add scaling and colormap changes to chords, FC plot, and edge plot - #165

Merged
pollaro merged 16 commits into
masterfrom
NET314_chordscale
Jul 30, 2026
Merged

[NET-314] Add scaling and colormap changes to chords, FC plot, and edge plot#165
pollaro merged 16 commits into
masterfrom
NET314_chordscale

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@pollaro

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This is messy because it's multiple PRs cherry-picked and then brought together.

  1. Add nla.gfx.colorSelector to create a colormap modal for FC plot, edge plot, and chords
  2. Add nla.gfx.scaleSelector for the same only for scale
  3. Add an input parameter to MatrixPlot for if the plot is being generated within an app window (the network result) or not
  4. Add color choices to the chord plots
  5. Add parameter changing options to all the chord options
  6. Add colormap, upper, and lower values to chord properties
  7. Add functional wrappers for scale changes to MatrixPlot and ChordPlotter (poor naming there, way to go code-monkey) to take changes from pop-up modals and apply

@pollaro
pollaro merged commit ebd56c9 into masterJul 30, 2026
2 checks passed
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@pollaro@actions-user
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
Skip to content

[NET-314] Add scaling and colormap changes to chords, FC plot, and edge plot - #165

Merged
pollaro merged 16 commits into
masterfrom
NET314_chordscale
Jul 30, 2026
Merged

[NET-314] Add scaling and colormap changes to chords, FC plot, and edge plot#165
pollaro merged 16 commits into
masterfrom
NET314_chordscale

Conversation

@pollaro

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This is messy because it's multiple PRs cherry-picked and then brought together.

  1. Add nla.gfx.colorSelector to create a colormap modal for FC plot, edge plot, and chords
  2. Add nla.gfx.scaleSelector for the same only for scale
  3. Add an input parameter to MatrixPlot for if the plot is being generated within an app window (the network result) or not
  4. Add color choices to the chord plots
  5. Add parameter changing options to all the chord options
  6. Add colormap, upper, and lower values to chord properties
  7. Add functional wrappers for scale changes to MatrixPlot and ChordPlotter (poor naming there, way to go code-monkey) to take changes from pop-up modals and apply

@pollaro
pollaro merged commit ebd56c9 into masterJul 30, 2026
2 checks passed
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@pollaro@actions-user
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

[NET-314] Add scaling and colormap changes to chords, FC plot, and edge plot - #165

Merged
pollaro merged 16 commits into
masterfrom
NET314_chordscale
Jul 30, 2026
Merged

[NET-314] Add scaling and colormap changes to chords, FC plot, and edge plot#165
pollaro merged 16 commits into
masterfrom
NET314_chordscale

Conversation

@pollaro

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This is messy because it's multiple PRs cherry-picked and then brought together.

  1. Add nla.gfx.colorSelector to create a colormap modal for FC plot, edge plot, and chords
  2. Add nla.gfx.scaleSelector for the same only for scale
  3. Add an input parameter to MatrixPlot for if the plot is being generated within an app window (the network result) or not
  4. Add color choices to the chord plots
  5. Add parameter changing options to all the chord options
  6. Add colormap, upper, and lower values to chord properties
  7. Add functional wrappers for scale changes to MatrixPlot and ChordPlotter (poor naming there, way to go code-monkey) to take changes from pop-up modals and apply

@pollaro
pollaro merged commit ebd56c9 into masterJul 30, 2026
2 checks passed
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@pollaro@actions-user
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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[NET-314] Add scaling and colormap changes to chords, FC plot, and edge plot - #165

Merged
pollaro merged 16 commits into
masterfrom
NET314_chordscale
Jul 30, 2026
Merged

[NET-314] Add scaling and colormap changes to chords, FC plot, and edge plot#165
pollaro merged 16 commits into
masterfrom
NET314_chordscale

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@pollaro

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This is messy because it's multiple PRs cherry-picked and then brought together.

  1. Add nla.gfx.colorSelector to create a colormap modal for FC plot, edge plot, and chords
  2. Add nla.gfx.scaleSelector for the same only for scale
  3. Add an input parameter to MatrixPlot for if the plot is being generated within an app window (the network result) or not
  4. Add color choices to the chord plots
  5. Add parameter changing options to all the chord options
  6. Add colormap, upper, and lower values to chord properties
  7. Add functional wrappers for scale changes to MatrixPlot and ChordPlotter (poor naming there, way to go code-monkey) to take changes from pop-up modals and apply

@pollaro
pollaro merged commit ebd56c9 into masterJul 30, 2026
2 checks passed
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@pollaro@actions-user
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode"); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
Skip to content

[NET-314] Add scaling and colormap changes to chords, FC plot, and edge plot - #165

Merged
pollaro merged 16 commits into
masterfrom
NET314_chordscale
Jul 30, 2026
Merged

[NET-314] Add scaling and colormap changes to chords, FC plot, and edge plot#165
pollaro merged 16 commits into
masterfrom
NET314_chordscale

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@pollaro

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This is messy because it's multiple PRs cherry-picked and then brought together.

  1. Add nla.gfx.colorSelector to create a colormap modal for FC plot, edge plot, and chords
  2. Add nla.gfx.scaleSelector for the same only for scale
  3. Add an input parameter to MatrixPlot for if the plot is being generated within an app window (the network result) or not
  4. Add color choices to the chord plots
  5. Add parameter changing options to all the chord options
  6. Add colormap, upper, and lower values to chord properties
  7. Add functional wrappers for scale changes to MatrixPlot and ChordPlotter (poor naming there, way to go code-monkey) to take changes from pop-up modals and apply

@pollaro
pollaro merged commit ebd56c9 into masterJul 30, 2026
2 checks passed
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