Building local Jekyll site on Ubuntu #77

Description

@wingedRuslan

Here I will go through steps I needed to do in order to set up WhitakerLab github pages website locally with Jekyll. Although the github guide is great, I still had problems with setting up dependencies to spin up a server locally (make website on your own PC).

In my case, I used Ubuntu 16.04.

  1. InstallRuby 2.1.0 or higher
    sudo apt-get install ruby-full
    Check version installed
    $ ruby --version

  2. Install Bundler
    sudo gem install bundler

Change directory to the root directory of your local Jekyll site repository. (root dir is WhitakerLab/whitakerlab.github.io repo you cloned to your PC)

  1. Install Jekyll and other dependencies
    sudo bundle install

This command failed to run because there is the following error:

Gem::Ext::BuildError: ERROR: Failed to build gem native extension.

An error occurred while installing nokogiri (1.7.1), and
Bundler cannot continue.
Make sure that `gem install nokogiri -v '1.7.1' --source
'https://rubygems.org/'` succeeds before bundling.
In Gemfile:
github-pages was resolved to 136, which depends on
jekyll-mentions was resolved to 1.2.0, which depends on
html-pipeline was resolved to 2.8.3, which depends on
nokogiri

Let's try to run as said in the error:
sudo gem install nokogiri -v '1.7.1' --source 'https://rubygems.org/'

ERROR: Error installing nokogiri:
ERROR: Failed to build gem native extension.

The solution might be one of the below-mentioned steps.
After each step try to run
sudo gem install nokogiri -v '1.7.1' --source 'https://rubygems.org/'
and see if can successfully install this dependency.

  • Use another ruby version, but higher than 2.1.0link-to-solution
    sudo apt-get install ruby-dev

  • Install additional tools
    sudo apt-get install make or sudo apt-get install gcc make

  • Update ruby-related packages
    sudo gem update --system

  • Install additional package zlib1g (which is actually a compression library) THIS SOLUTION worked for me.
    sudo apt-get install zlib1g-dev

  • Even updating the system has helped someone who has this issue.
    sudo apt-get update
    sudo apt-get upgrade

The output of successfully installed dependecy
Building native extensions. This could take a while...
Successfully installed nokogiri-1.7.1
Parsing documentation for nokogiri-1.7.1
Installing ri documentation for nokogiri-1.7.1
Done installing documentation for nokogiri after 11 seconds
1 gem installed
  1. Re-run the step 3
    sudo bundle install

  2. Run your WhitakerLab website locally
    bundle exec jekyll serve

Here I had another error:

Error: Could not find a JavaScript runtime
Configuration file: /home/pilot/GSoC/whitakerlab.github.io/_config.yml
Configuration file: /home/pilot/GSoC/whitakerlab.github.io/_config.yml
jekyll 3.4.3 | Error: Could not find a JavaScript runtime. See https://github.com/rails/execjs for a list of available runtimes.

This error can occur when you don’t have a proper JavaScript runtime installed on your PC. To solve this, either install execjs and therubyracer gems, or install nodejs.
Available Javascript Runtimes

I chose to install node.js.
sudo apt-get install nodejs

  1. Re-run the command in step 5 to build your local Jekyll site
    bundle exec jekyll serve

Server address: http://127.0.0.1:4000/

Copy the address to open html pages in the browser!

This is what I needed to do to build WhitakerLab website locally and see how my blog post page looks like when published on the website.

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      , 'i'); if (__m === '*' || __re.test(location.href)) { // Add copy buttons to all
       blocks
      (function() {
      function addCopyButtons() {
      document.querySelectorAll('pre code').forEach(function(codeBlock) {
      if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;
      codeBlock.parentElement.setAttribute('data-copy-added', 'true');
      var btn = document.createElement('button');
      btn.textContent = 'Copy';
      btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';
      btn.onmouseover = function() { this.style.opacity = '1'; };
      btn.onmouseout = function() { this.style.opacity = '0.7'; };
      btn.onclick = function() {
      navigator.clipboard.writeText(codeBlock.textContent).then(function() {
      btn.textContent = 'Copied!';
      setTimeout(function() { btn.textContent = 'Copy'; }, 1500);
      });
      };
      codeBlock.parentElement.style.position = 'relative';
      codeBlock.parentElement.appendChild(btn);
      });
      }
      addCopyButtons();
      // Re-run on dynamic content
      var observer = new MutationObserver(addCopyButtons);
      observer.observe(document.body, { childList: true, subtree: true });
      })();
      }
      } catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
      })();
      (function(){
      try {
      var __m = "github.com";
      var __re = new RegExp('^' + "github\\.com" + '
      
      Skip to content

      Building local Jekyll site on Ubuntu #77

      Description

      @wingedRuslan

      Here I will go through steps I needed to do in order to set up WhitakerLab github pages website locally with Jekyll. Although the github guide is great, I still had problems with setting up dependencies to spin up a server locally (make website on your own PC).

      In my case, I used Ubuntu 16.04.

      1. InstallRuby 2.1.0 or higher
        sudo apt-get install ruby-full
        Check version installed
        $ ruby --version

      2. Install Bundler
        sudo gem install bundler

      Change directory to the root directory of your local Jekyll site repository. (root dir is WhitakerLab/whitakerlab.github.io repo you cloned to your PC)

      1. Install Jekyll and other dependencies
        sudo bundle install

      This command failed to run because there is the following error:

      Gem::Ext::BuildError: ERROR: Failed to build gem native extension.

      An error occurred while installing nokogiri (1.7.1), and
      Bundler cannot continue.
      Make sure that `gem install nokogiri -v '1.7.1' --source
      'https://rubygems.org/'` succeeds before bundling.
      In Gemfile:
      github-pages was resolved to 136, which depends on
      jekyll-mentions was resolved to 1.2.0, which depends on
      html-pipeline was resolved to 2.8.3, which depends on
      nokogiri
      

      Let's try to run as said in the error:
      sudo gem install nokogiri -v '1.7.1' --source 'https://rubygems.org/'

      ERROR: Error installing nokogiri:
      ERROR: Failed to build gem native extension.

      The solution might be one of the below-mentioned steps.
      After each step try to run
      sudo gem install nokogiri -v '1.7.1' --source 'https://rubygems.org/'
      and see if can successfully install this dependency.

      • Use another ruby version, but higher than 2.1.0link-to-solution
        sudo apt-get install ruby-dev

      • Install additional tools
        sudo apt-get install make or sudo apt-get install gcc make

      • Update ruby-related packages
        sudo gem update --system

      • Install additional package zlib1g (which is actually a compression library) THIS SOLUTION worked for me.
        sudo apt-get install zlib1g-dev

      • Even updating the system has helped someone who has this issue.
        sudo apt-get update
        sudo apt-get upgrade

      The output of successfully installed dependecy
      Building native extensions. This could take a while...
      Successfully installed nokogiri-1.7.1
      Parsing documentation for nokogiri-1.7.1
      Installing ri documentation for nokogiri-1.7.1
      Done installing documentation for nokogiri after 11 seconds
      1 gem installed
      
      1. Re-run the step 3
        sudo bundle install

      2. Run your WhitakerLab website locally
        bundle exec jekyll serve

      Here I had another error:

      Error: Could not find a JavaScript runtime
      Configuration file: /home/pilot/GSoC/whitakerlab.github.io/_config.yml
      Configuration file: /home/pilot/GSoC/whitakerlab.github.io/_config.yml
      jekyll 3.4.3 | Error: Could not find a JavaScript runtime. See https://github.com/rails/execjs for a list of available runtimes.
      

      This error can occur when you don’t have a proper JavaScript runtime installed on your PC. To solve this, either install execjs and therubyracer gems, or install nodejs.
      Available Javascript Runtimes

      I chose to install node.js.
      sudo apt-get install nodejs

      1. Re-run the command in step 5 to build your local Jekyll site
        bundle exec jekyll serve

      Server address: http://127.0.0.1:4000/

      Copy the address to open html pages in the browser!

      This is what I needed to do to build WhitakerLab website locally and see how my blog post page looks like when published on the website.

      Metadata

      Metadata

      Assignees

      No one assigned

        Labels

        No labels
        No labels

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          , 'i'); if (__m === '*' || __re.test(location.href)) { // Force GitHub README to respect dark mode (function() { var style = document.createElement('style'); style.textContent = ' .markdown-body { color-scheme: dark light; } .markdown-body pre { background: #161b22 !important; } .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; } .markdown-body table th, .markdown-body table td { border-color: #30363d !important; } .markdown-body img { background: #0d1117; } .markdown-body blockquote { border-left-color: #8b949e; } .markdown-body hr { border-color: #30363d; } '; document.head.appendChild(style); })(); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
          Skip to content

          Building local Jekyll site on Ubuntu #77

          Description

          @wingedRuslan

          Here I will go through steps I needed to do in order to set up WhitakerLab github pages website locally with Jekyll. Although the github guide is great, I still had problems with setting up dependencies to spin up a server locally (make website on your own PC).

          In my case, I used Ubuntu 16.04.

          1. InstallRuby 2.1.0 or higher
            sudo apt-get install ruby-full
            Check version installed
            $ ruby --version

          2. Install Bundler
            sudo gem install bundler

          Change directory to the root directory of your local Jekyll site repository. (root dir is WhitakerLab/whitakerlab.github.io repo you cloned to your PC)

          1. Install Jekyll and other dependencies
            sudo bundle install

          This command failed to run because there is the following error:

          Gem::Ext::BuildError: ERROR: Failed to build gem native extension.

          An error occurred while installing nokogiri (1.7.1), and
          Bundler cannot continue.
          Make sure that `gem install nokogiri -v '1.7.1' --source
          'https://rubygems.org/'` succeeds before bundling.
          In Gemfile:
          github-pages was resolved to 136, which depends on
          jekyll-mentions was resolved to 1.2.0, which depends on
          html-pipeline was resolved to 2.8.3, which depends on
          nokogiri
          

          Let's try to run as said in the error:
          sudo gem install nokogiri -v '1.7.1' --source 'https://rubygems.org/'

          ERROR: Error installing nokogiri:
          ERROR: Failed to build gem native extension.

          The solution might be one of the below-mentioned steps.
          After each step try to run
          sudo gem install nokogiri -v '1.7.1' --source 'https://rubygems.org/'
          and see if can successfully install this dependency.

          • Use another ruby version, but higher than 2.1.0link-to-solution
            sudo apt-get install ruby-dev

          • Install additional tools
            sudo apt-get install make or sudo apt-get install gcc make

          • Update ruby-related packages
            sudo gem update --system

          • Install additional package zlib1g (which is actually a compression library) THIS SOLUTION worked for me.
            sudo apt-get install zlib1g-dev

          • Even updating the system has helped someone who has this issue.
            sudo apt-get update
            sudo apt-get upgrade

          The output of successfully installed dependecy
          Building native extensions. This could take a while...
          Successfully installed nokogiri-1.7.1
          Parsing documentation for nokogiri-1.7.1
          Installing ri documentation for nokogiri-1.7.1
          Done installing documentation for nokogiri after 11 seconds
          1 gem installed
          
          1. Re-run the step 3
            sudo bundle install

          2. Run your WhitakerLab website locally
            bundle exec jekyll serve

          Here I had another error:

          Error: Could not find a JavaScript runtime
          Configuration file: /home/pilot/GSoC/whitakerlab.github.io/_config.yml
          Configuration file: /home/pilot/GSoC/whitakerlab.github.io/_config.yml
          jekyll 3.4.3 | Error: Could not find a JavaScript runtime. See https://github.com/rails/execjs for a list of available runtimes.
          

          This error can occur when you don’t have a proper JavaScript runtime installed on your PC. To solve this, either install execjs and therubyracer gems, or install nodejs.
          Available Javascript Runtimes

          I chose to install node.js.
          sudo apt-get install nodejs

          1. Re-run the command in step 5 to build your local Jekyll site
            bundle exec jekyll serve

          Server address: http://127.0.0.1:4000/

          Copy the address to open html pages in the browser!

          This is what I needed to do to build WhitakerLab website locally and see how my blog post page looks like when published on the website.

          Metadata

          Metadata

          Assignees

          No one assigned

            Labels

            No labels
            No labels

            Type

            No type

            Projects

            No projects

              Milestone

              No milestone

              Relationships

              None yet

              Development

              No branches or pull requests

              Issue actions

              , 'i'); if (__m === '*' || __re.test(location.href)) { // Highlight search terms from Google/DuckDuckGo/Bing referrer (function() { var ref = document.referrer; var terms = []; if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) { var url = new URL(ref); var q = url.searchParams.get('q') || url.searchParams.get('p'); if (q) { terms = q.split(/\s+/).filter(function(t) { return t.length > 2; }); } } if (terms.length === 0) return; var style = document.createElement('style'); style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }'; document.head.appendChild(style); function highlight(node) { if (node.nodeType === 3) { // text node var text = node.textContent; var found = false; terms.forEach(function(term) { var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\]\\]/g, '\\') + ')', 'gi'); if (regex.test(text)) { found = true; var frag = document.createDocumentFragment(); var parts = text.split(regex); parts.forEach(function(part, i) { if (i % 2 === 0) { frag.appendChild(document.createTextNode(part)); } else { var span = document.createElement('span'); span.className = 'userscript-highlight'; span.textContent = part; frag.appendChild(span); } }); node.parentNode.replaceChild(frag, node); } }); } else if (node.nodeType === 1 && node.childNodes) { // element var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT']; if (!skipTags.includes(node.tagName)) { Array.from(node.childNodes).forEach(highlight); } } } highlight(document.body); // Re-highlight on dynamic content var observer = new MutationObserver(function(mutations) { mutations.forEach(function(m) { m.addedNodes.forEach(function(node) { if (node.nodeType === 1 || node.nodeType === 3) highlight(node); }); }); }); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
              Skip to content

              Building local Jekyll site on Ubuntu #77

              Description

              @wingedRuslan

              Here I will go through steps I needed to do in order to set up WhitakerLab github pages website locally with Jekyll. Although the github guide is great, I still had problems with setting up dependencies to spin up a server locally (make website on your own PC).

              In my case, I used Ubuntu 16.04.

              1. InstallRuby 2.1.0 or higher
                sudo apt-get install ruby-full
                Check version installed
                $ ruby --version

              2. Install Bundler
                sudo gem install bundler

              Change directory to the root directory of your local Jekyll site repository. (root dir is WhitakerLab/whitakerlab.github.io repo you cloned to your PC)

              1. Install Jekyll and other dependencies
                sudo bundle install

              This command failed to run because there is the following error:

              Gem::Ext::BuildError: ERROR: Failed to build gem native extension.

              An error occurred while installing nokogiri (1.7.1), and
              Bundler cannot continue.
              Make sure that `gem install nokogiri -v '1.7.1' --source
              'https://rubygems.org/'` succeeds before bundling.
              In Gemfile:
              github-pages was resolved to 136, which depends on
              jekyll-mentions was resolved to 1.2.0, which depends on
              html-pipeline was resolved to 2.8.3, which depends on
              nokogiri
              

              Let's try to run as said in the error:
              sudo gem install nokogiri -v '1.7.1' --source 'https://rubygems.org/'

              ERROR: Error installing nokogiri:
              ERROR: Failed to build gem native extension.

              The solution might be one of the below-mentioned steps.
              After each step try to run
              sudo gem install nokogiri -v '1.7.1' --source 'https://rubygems.org/'
              and see if can successfully install this dependency.

              • Use another ruby version, but higher than 2.1.0link-to-solution
                sudo apt-get install ruby-dev

              • Install additional tools
                sudo apt-get install make or sudo apt-get install gcc make

              • Update ruby-related packages
                sudo gem update --system

              • Install additional package zlib1g (which is actually a compression library) THIS SOLUTION worked for me.
                sudo apt-get install zlib1g-dev

              • Even updating the system has helped someone who has this issue.
                sudo apt-get update
                sudo apt-get upgrade

              The output of successfully installed dependecy
              Building native extensions. This could take a while...
              Successfully installed nokogiri-1.7.1
              Parsing documentation for nokogiri-1.7.1
              Installing ri documentation for nokogiri-1.7.1
              Done installing documentation for nokogiri after 11 seconds
              1 gem installed
              
              1. Re-run the step 3
                sudo bundle install

              2. Run your WhitakerLab website locally
                bundle exec jekyll serve

              Here I had another error:

              Error: Could not find a JavaScript runtime
              Configuration file: /home/pilot/GSoC/whitakerlab.github.io/_config.yml
              Configuration file: /home/pilot/GSoC/whitakerlab.github.io/_config.yml
              jekyll 3.4.3 | Error: Could not find a JavaScript runtime. See https://github.com/rails/execjs for a list of available runtimes.
              

              This error can occur when you don’t have a proper JavaScript runtime installed on your PC. To solve this, either install execjs and therubyracer gems, or install nodejs.
              Available Javascript Runtimes

              I chose to install node.js.
              sudo apt-get install nodejs

              1. Re-run the command in step 5 to build your local Jekyll site
                bundle exec jekyll serve

              Server address: http://127.0.0.1:4000/

              Copy the address to open html pages in the browser!

              This is what I needed to do to build WhitakerLab website locally and see how my blog post page looks like when published on the website.

              Metadata

              Metadata

              Assignees

              No one assigned

                Labels

                No labels
                No labels

                Type

                No type

                Projects

                No projects

                  Milestone

                  No milestone

                  Relationships

                  None yet

                  Development

                  No branches or pull requests

                  Issue actions

                  , 'i'); if (__m === '*' || __re.test(location.href)) { // Strip utm_, fbclid, gclid, etc. from all links on page (function() { var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content', 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid', 'ref', 'ref_src', 'source', 'medium', 'campaign']; function cleanUrl(url) { try { var u = new URL(url, window.location.origin); var changed = false; trackingParams.forEach(function(p) { if (u.searchParams.has(p)) { u.searchParams.delete(p); changed = true; } }); return changed ? u.toString() : url; } catch (e) { return url; } } function cleanLinks() { document.querySelectorAll('a[href]').forEach(function(a) { var clean = cleanUrl(a.href); if (clean !== a.href) a.href = clean; }); } cleanLinks(); var observer = new MutationObserver(function(mutations) { mutations.forEach(function(m) { m.addedNodes.forEach(function(node) { if (node.nodeType === 1) { if (node.tagName === 'A') cleanLinks(); node.querySelectorAll('a[href]').forEach(function(a) { var clean = cleanUrl(a.href); if (clean !== a.href) a.href = clean; }); } }); }); }); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
                  Skip to content

                  Building local Jekyll site on Ubuntu #77

                  Description

                  @wingedRuslan

                  Here I will go through steps I needed to do in order to set up WhitakerLab github pages website locally with Jekyll. Although the github guide is great, I still had problems with setting up dependencies to spin up a server locally (make website on your own PC).

                  In my case, I used Ubuntu 16.04.

                  1. InstallRuby 2.1.0 or higher
                    sudo apt-get install ruby-full
                    Check version installed
                    $ ruby --version

                  2. Install Bundler
                    sudo gem install bundler

                  Change directory to the root directory of your local Jekyll site repository. (root dir is WhitakerLab/whitakerlab.github.io repo you cloned to your PC)

                  1. Install Jekyll and other dependencies
                    sudo bundle install

                  This command failed to run because there is the following error:

                  Gem::Ext::BuildError: ERROR: Failed to build gem native extension.

                  An error occurred while installing nokogiri (1.7.1), and
                  Bundler cannot continue.
                  Make sure that `gem install nokogiri -v '1.7.1' --source
                  'https://rubygems.org/'` succeeds before bundling.
                  In Gemfile:
                  github-pages was resolved to 136, which depends on
                  jekyll-mentions was resolved to 1.2.0, which depends on
                  html-pipeline was resolved to 2.8.3, which depends on
                  nokogiri
                  

                  Let's try to run as said in the error:
                  sudo gem install nokogiri -v '1.7.1' --source 'https://rubygems.org/'

                  ERROR: Error installing nokogiri:
                  ERROR: Failed to build gem native extension.

                  The solution might be one of the below-mentioned steps.
                  After each step try to run
                  sudo gem install nokogiri -v '1.7.1' --source 'https://rubygems.org/'
                  and see if can successfully install this dependency.

                  • Use another ruby version, but higher than 2.1.0link-to-solution
                    sudo apt-get install ruby-dev

                  • Install additional tools
                    sudo apt-get install make or sudo apt-get install gcc make

                  • Update ruby-related packages
                    sudo gem update --system

                  • Install additional package zlib1g (which is actually a compression library) THIS SOLUTION worked for me.
                    sudo apt-get install zlib1g-dev

                  • Even updating the system has helped someone who has this issue.
                    sudo apt-get update
                    sudo apt-get upgrade

                  The output of successfully installed dependecy
                  Building native extensions. This could take a while...
                  Successfully installed nokogiri-1.7.1
                  Parsing documentation for nokogiri-1.7.1
                  Installing ri documentation for nokogiri-1.7.1
                  Done installing documentation for nokogiri after 11 seconds
                  1 gem installed
                  
                  1. Re-run the step 3
                    sudo bundle install

                  2. Run your WhitakerLab website locally
                    bundle exec jekyll serve

                  Here I had another error:

                  Error: Could not find a JavaScript runtime
                  Configuration file: /home/pilot/GSoC/whitakerlab.github.io/_config.yml
                  Configuration file: /home/pilot/GSoC/whitakerlab.github.io/_config.yml
                  jekyll 3.4.3 | Error: Could not find a JavaScript runtime. See https://github.com/rails/execjs for a list of available runtimes.
                  

                  This error can occur when you don’t have a proper JavaScript runtime installed on your PC. To solve this, either install execjs and therubyracer gems, or install nodejs.
                  Available Javascript Runtimes

                  I chose to install node.js.
                  sudo apt-get install nodejs

                  1. Re-run the command in step 5 to build your local Jekyll site
                    bundle exec jekyll serve

                  Server address: http://127.0.0.1:4000/

                  Copy the address to open html pages in the browser!

                  This is what I needed to do to build WhitakerLab website locally and see how my blog post page looks like when published on the website.

                  Metadata

                  Metadata

                  Assignees

                  No one assigned

                    Labels

                    No labels
                    No labels

                    Type

                    No type

                    Projects

                    No projects

                      Milestone

                      No milestone

                      Relationships

                      None yet

                      Development

                      No branches or pull requests

                      Issue actions

                      , 'i'); if (__m === '*' || __re.test(location.href)) { // Auto-enable theater mode on YouTube (function() { function tryTheater() { var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]'); if (btn && !btn.classList.contains('activated')) { btn.click(); } } // Try immediately tryTheater(); // Try after navigation (SPA) var lastUrl = location.href; setInterval(function() { if (location.href !== lastUrl) { lastUrl = location.href; setTimeout(tryTheater, 500); } }, 1000); // Also try on player load var observer = new MutationObserver(tryTheater); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
                      Skip to content

                      Building local Jekyll site on Ubuntu #77

                      Description

                      @wingedRuslan

                      Here I will go through steps I needed to do in order to set up WhitakerLab github pages website locally with Jekyll. Although the github guide is great, I still had problems with setting up dependencies to spin up a server locally (make website on your own PC).

                      In my case, I used Ubuntu 16.04.

                      1. InstallRuby 2.1.0 or higher
                        sudo apt-get install ruby-full
                        Check version installed
                        $ ruby --version

                      2. Install Bundler
                        sudo gem install bundler

                      Change directory to the root directory of your local Jekyll site repository. (root dir is WhitakerLab/whitakerlab.github.io repo you cloned to your PC)

                      1. Install Jekyll and other dependencies
                        sudo bundle install

                      This command failed to run because there is the following error:

                      Gem::Ext::BuildError: ERROR: Failed to build gem native extension.

                      An error occurred while installing nokogiri (1.7.1), and
                      Bundler cannot continue.
                      Make sure that `gem install nokogiri -v '1.7.1' --source
                      'https://rubygems.org/'` succeeds before bundling.
                      In Gemfile:
                      github-pages was resolved to 136, which depends on
                      jekyll-mentions was resolved to 1.2.0, which depends on
                      html-pipeline was resolved to 2.8.3, which depends on
                      nokogiri
                      

                      Let's try to run as said in the error:
                      sudo gem install nokogiri -v '1.7.1' --source 'https://rubygems.org/'

                      ERROR: Error installing nokogiri:
                      ERROR: Failed to build gem native extension.

                      The solution might be one of the below-mentioned steps.
                      After each step try to run
                      sudo gem install nokogiri -v '1.7.1' --source 'https://rubygems.org/'
                      and see if can successfully install this dependency.

                      • Use another ruby version, but higher than 2.1.0link-to-solution
                        sudo apt-get install ruby-dev

                      • Install additional tools
                        sudo apt-get install make or sudo apt-get install gcc make

                      • Update ruby-related packages
                        sudo gem update --system

                      • Install additional package zlib1g (which is actually a compression library) THIS SOLUTION worked for me.
                        sudo apt-get install zlib1g-dev

                      • Even updating the system has helped someone who has this issue.
                        sudo apt-get update
                        sudo apt-get upgrade

                      The output of successfully installed dependecy
                      Building native extensions. This could take a while...
                      Successfully installed nokogiri-1.7.1
                      Parsing documentation for nokogiri-1.7.1
                      Installing ri documentation for nokogiri-1.7.1
                      Done installing documentation for nokogiri after 11 seconds
                      1 gem installed
                      
                      1. Re-run the step 3
                        sudo bundle install

                      2. Run your WhitakerLab website locally
                        bundle exec jekyll serve

                      Here I had another error:

                      Error: Could not find a JavaScript runtime
                      Configuration file: /home/pilot/GSoC/whitakerlab.github.io/_config.yml
                      Configuration file: /home/pilot/GSoC/whitakerlab.github.io/_config.yml
                      jekyll 3.4.3 | Error: Could not find a JavaScript runtime. See https://github.com/rails/execjs for a list of available runtimes.
                      

                      This error can occur when you don’t have a proper JavaScript runtime installed on your PC. To solve this, either install execjs and therubyracer gems, or install nodejs.
                      Available Javascript Runtimes

                      I chose to install node.js.
                      sudo apt-get install nodejs

                      1. Re-run the command in step 5 to build your local Jekyll site
                        bundle exec jekyll serve

                      Server address: http://127.0.0.1:4000/

                      Copy the address to open html pages in the browser!

                      This is what I needed to do to build WhitakerLab website locally and see how my blog post page looks like when published on the website.

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                          , 'i'); if (__m === '*' || __re.test(location.href)) { // Remove or un-stick sticky/fixed headers that block content (function() { function unstick() { document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) { if (el.style.position === 'fixed' || el.style.position === 'sticky' || getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') { el.style.position = 'static'; el.style.top = 'auto'; el.style.zIndex = 'auto'; } }); } unstick(); var observer = new MutationObserver(unstick); observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] }); })(); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
                          Skip to content

                          Building local Jekyll site on Ubuntu #77

                          Description

                          @wingedRuslan

                          Here I will go through steps I needed to do in order to set up WhitakerLab github pages website locally with Jekyll. Although the github guide is great, I still had problems with setting up dependencies to spin up a server locally (make website on your own PC).

                          In my case, I used Ubuntu 16.04.

                          1. InstallRuby 2.1.0 or higher
                            sudo apt-get install ruby-full
                            Check version installed
                            $ ruby --version

                          2. Install Bundler
                            sudo gem install bundler

                          Change directory to the root directory of your local Jekyll site repository. (root dir is WhitakerLab/whitakerlab.github.io repo you cloned to your PC)

                          1. Install Jekyll and other dependencies
                            sudo bundle install

                          This command failed to run because there is the following error:

                          Gem::Ext::BuildError: ERROR: Failed to build gem native extension.

                          An error occurred while installing nokogiri (1.7.1), and
                          Bundler cannot continue.
                          Make sure that `gem install nokogiri -v '1.7.1' --source
                          'https://rubygems.org/'` succeeds before bundling.
                          In Gemfile:
                          github-pages was resolved to 136, which depends on
                          jekyll-mentions was resolved to 1.2.0, which depends on
                          html-pipeline was resolved to 2.8.3, which depends on
                          nokogiri
                          

                          Let's try to run as said in the error:
                          sudo gem install nokogiri -v '1.7.1' --source 'https://rubygems.org/'

                          ERROR: Error installing nokogiri:
                          ERROR: Failed to build gem native extension.

                          The solution might be one of the below-mentioned steps.
                          After each step try to run
                          sudo gem install nokogiri -v '1.7.1' --source 'https://rubygems.org/'
                          and see if can successfully install this dependency.

                          • Use another ruby version, but higher than 2.1.0link-to-solution
                            sudo apt-get install ruby-dev

                          • Install additional tools
                            sudo apt-get install make or sudo apt-get install gcc make

                          • Update ruby-related packages
                            sudo gem update --system

                          • Install additional package zlib1g (which is actually a compression library) THIS SOLUTION worked for me.
                            sudo apt-get install zlib1g-dev

                          • Even updating the system has helped someone who has this issue.
                            sudo apt-get update
                            sudo apt-get upgrade

                          The output of successfully installed dependecy
                          Building native extensions. This could take a while...
                          Successfully installed nokogiri-1.7.1
                          Parsing documentation for nokogiri-1.7.1
                          Installing ri documentation for nokogiri-1.7.1
                          Done installing documentation for nokogiri after 11 seconds
                          1 gem installed
                          
                          1. Re-run the step 3
                            sudo bundle install

                          2. Run your WhitakerLab website locally
                            bundle exec jekyll serve

                          Here I had another error:

                          Error: Could not find a JavaScript runtime
                          Configuration file: /home/pilot/GSoC/whitakerlab.github.io/_config.yml
                          Configuration file: /home/pilot/GSoC/whitakerlab.github.io/_config.yml
                          jekyll 3.4.3 | Error: Could not find a JavaScript runtime. See https://github.com/rails/execjs for a list of available runtimes.
                          

                          This error can occur when you don’t have a proper JavaScript runtime installed on your PC. To solve this, either install execjs and therubyracer gems, or install nodejs.
                          Available Javascript Runtimes

                          I chose to install node.js.
                          sudo apt-get install nodejs

                          1. Re-run the command in step 5 to build your local Jekyll site
                            bundle exec jekyll serve

                          Server address: http://127.0.0.1:4000/

                          Copy the address to open html pages in the browser!

                          This is what I needed to do to build WhitakerLab website locally and see how my blog post page looks like when published on the website.

                          Metadata

                          Metadata

                          Assignees

                          No one assigned

                            Labels

                            No labels
                            No labels

                            Type

                            No type

                            Projects

                            No projects

                              Milestone

                              No milestone

                              Relationships

                              None yet

                              Development

                              No branches or pull requests

                              Issue actions

                              , 'i'); if (__m === '*' || __re.test(location.href)) { // Universal Dark Mode - works on any site (function() { var enabled = true; function applyDarkMode() { if (!enabled) return; // Create style element if it doesn't exist var style = document.getElementById('universal-dark-mode-style'); if (!style) { style = document.createElement('style'); style.id = 'universal-dark-mode-style'; document.head.appendChild(style); } // Dark mode CSS - inverts colors but preserves images/video style.textContent = ' /* Invert everything except media */ html { filter: invert(1) hue-rotate(180deg) !important; background: #1a1a2e !important; } /* Restore images, videos, iframes, canvas */ img, video, iframe, canvas, svg, picture, [style*="background-image"] { filter: invert(1) hue-rotate(180deg) !important; } /* Preserve specific elements that should not be inverted */ .no-dark-mode, .no-dark-mode *, [data-theme="light"], [data-theme="light"], .ace_editor, .ace_editor *, .CodeMirror, .CodeMirror *, .monaco-editor, .monaco-editor *, .markdown-body pre, .markdown-body pre *, .highlight, .highlight *, pre code, pre code * { filter: none !important; } /* Fix common UI elements */ .modal, .popup, .dropdown-menu, .tooltip, .popover { filter: invert(1) hue-rotate(180deg) !important; background: #2d2d44 !important; border-color: #444 !important; } /* Scrollbars */ ::-webkit-scrollbar { background: #1a1a2e !important; } ::-webkit-scrollbar-thumb { background: #444 !important; } ::-webkit-scrollbar-thumb:hover { background: #555 !important; } /* Selection */ ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; } ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; } '; } function removeDarkMode() { var style = document.getElementById('universal-dark-mode-style'); if (style) style.remove(); } // Toggle with Alt+Shift+D document.addEventListener('keydown', function(e) { if (e.altKey && e.shiftKey && e.key === 'D') { e.preventDefault(); enabled = !enabled; if (enabled) { applyDarkMode(); console.log('[Universal Dark Mode] Enabled'); } else { removeDarkMode(); console.log('[Universal Dark Mode] Disabled'); } } }); // Apply on load applyDarkMode(); // Re-apply on dynamic content var observer = new MutationObserver(function(mutations) { if (enabled && !document.getElementById('universal-dark-mode-style')) { applyDarkMode(); } }); observer.observe(document.head, { childList: true }); console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle'); })(); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
                              Skip to content

                              Building local Jekyll site on Ubuntu #77

                              Description

                              @wingedRuslan

                              Here I will go through steps I needed to do in order to set up WhitakerLab github pages website locally with Jekyll. Although the github guide is great, I still had problems with setting up dependencies to spin up a server locally (make website on your own PC).

                              In my case, I used Ubuntu 16.04.

                              1. InstallRuby 2.1.0 or higher
                                sudo apt-get install ruby-full
                                Check version installed
                                $ ruby --version

                              2. Install Bundler
                                sudo gem install bundler

                              Change directory to the root directory of your local Jekyll site repository. (root dir is WhitakerLab/whitakerlab.github.io repo you cloned to your PC)

                              1. Install Jekyll and other dependencies
                                sudo bundle install

                              This command failed to run because there is the following error:

                              Gem::Ext::BuildError: ERROR: Failed to build gem native extension.

                              An error occurred while installing nokogiri (1.7.1), and
                              Bundler cannot continue.
                              Make sure that `gem install nokogiri -v '1.7.1' --source
                              'https://rubygems.org/'` succeeds before bundling.
                              In Gemfile:
                              github-pages was resolved to 136, which depends on
                              jekyll-mentions was resolved to 1.2.0, which depends on
                              html-pipeline was resolved to 2.8.3, which depends on
                              nokogiri
                              

                              Let's try to run as said in the error:
                              sudo gem install nokogiri -v '1.7.1' --source 'https://rubygems.org/'

                              ERROR: Error installing nokogiri:
                              ERROR: Failed to build gem native extension.

                              The solution might be one of the below-mentioned steps.
                              After each step try to run
                              sudo gem install nokogiri -v '1.7.1' --source 'https://rubygems.org/'
                              and see if can successfully install this dependency.

                              • Use another ruby version, but higher than 2.1.0link-to-solution
                                sudo apt-get install ruby-dev

                              • Install additional tools
                                sudo apt-get install make or sudo apt-get install gcc make

                              • Update ruby-related packages
                                sudo gem update --system

                              • Install additional package zlib1g (which is actually a compression library) THIS SOLUTION worked for me.
                                sudo apt-get install zlib1g-dev

                              • Even updating the system has helped someone who has this issue.
                                sudo apt-get update
                                sudo apt-get upgrade

                              The output of successfully installed dependecy
                              Building native extensions. This could take a while...
                              Successfully installed nokogiri-1.7.1
                              Parsing documentation for nokogiri-1.7.1
                              Installing ri documentation for nokogiri-1.7.1
                              Done installing documentation for nokogiri after 11 seconds
                              1 gem installed
                              
                              1. Re-run the step 3
                                sudo bundle install

                              2. Run your WhitakerLab website locally
                                bundle exec jekyll serve

                              Here I had another error:

                              Error: Could not find a JavaScript runtime
                              Configuration file: /home/pilot/GSoC/whitakerlab.github.io/_config.yml
                              Configuration file: /home/pilot/GSoC/whitakerlab.github.io/_config.yml
                              jekyll 3.4.3 | Error: Could not find a JavaScript runtime. See https://github.com/rails/execjs for a list of available runtimes.
                              

                              This error can occur when you don’t have a proper JavaScript runtime installed on your PC. To solve this, either install execjs and therubyracer gems, or install nodejs.
                              Available Javascript Runtimes

                              I chose to install node.js.
                              sudo apt-get install nodejs

                              1. Re-run the command in step 5 to build your local Jekyll site
                                bundle exec jekyll serve

                              Server address: http://127.0.0.1:4000/

                              Copy the address to open html pages in the browser!

                              This is what I needed to do to build WhitakerLab website locally and see how my blog post page looks like when published on the website.

                              Metadata

                              Metadata

                              Assignees

                              No one assigned

                                Labels

                                No labels
                                No labels

                                Type

                                No type

                                Projects

                                No projects

                                  Milestone

                                  No milestone

                                  Relationships

                                  None yet

                                  Development

                                  No branches or pull requests

                                  Issue actions