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1. PathoGenOmics-Lab/VIPERAPathoGenOmics-Lab/VIPERAPublic

   A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis

   Python 8

2. PathoGenOmics-Lab/tcfinderPathoGenOmics-Lab/tcfinderPublic

   A lightweight tool to find clusters of samples within a phylogeny

   Rust 1

3. PathoGenOmics-Lab/transclusterPathoGenOmics-Lab/transclusterPublic

   A Snakemake workflow to find SARS-CoV-2 clusters in a reference phylogeny and estimate their normalized clustering index

   Python 2

4. PathoGenOmics-Lab/afwdistPathoGenOmics-Lab/afwdistPublic

   A lightweight tool to calculate a pairwise distance metric based on fixed and non-fixed allele frequencies

   Rust

5. solpokusolpokuPublic

   a sudoku solver using ILP

   Python