PathoGenOmics Lab

Identifies multiple SNVs within the same codon, reclassifies them as MNVs, and accurately computes resulting amino acid changes from genomic reads

Genome classificator using machine learning and SNP markers.

A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis

Extracts a distance matrix from a phylogeny (parallel, low-memory)

Calculates pairwise distances between samples using alelle frequencies

snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage and high-speed performance.

A lightweight tool to calculate a pairwise distance metric based on fixed and non-fixed allele frequencies

R Color package for Mycobacterium tuberculosis complex

A Snakemake workflow to find SARS-CoV-2 clusters in a reference phylogeny and estimate their normalized clustering index

A lightweight tool to find clusters of samples within a phylogeny