HBASE-27820: HBase is not starting due to Jersey library conflicts wi… by ragarkar · Pull Request #5210 · apache/hbase

ragarkar · 2023-04-28T11:38:56Z

HBase is not starting due to Jersey library conflicts with javax.ws.rs.api jar

HBase uses shaded jersey jars and hence does not need to use this jar directly. However, it still adds this jar to the CLASSPATH while starting the server. Atlas on the other hand is using a non-shaded version of javax.ws.rs-api jar which causes this conflict and causes the hbase server fail while initializing atlas co-processor.

Since hbase is using shaded jersey jar and not using this jar directly, it should be removed from the bundle as it may cause similar conflicts with other client applications potentially using it.

…th javax.ws.rs.api jar

Apache-HBase · 2023-04-28T11:42:08Z

🎊 +1 overall

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Apache-HBase · 2023-04-28T11:42:56Z

🎊 +1 overall

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Apache-HBase · 2023-04-28T11:44:48Z

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Apache9 · 2023-04-28T13:36:43Z

I think we should try to not ship this jar in the publish tarball, instead of excluding it when starting?

ragarkar · 2023-05-04T10:27:51Z

I think we should try to not ship this jar in the publish tarball, instead of excluding it when starting?

I will push a change similar to the one in HBASE-26813 to see what all failures are seen with the change. Regarding removing the jar from the publish tarball, not sure if any other components depend on it.

Apache9 · 2023-05-04T10:35:03Z

And we have shaded jersey in hbase-thirdparty and in hbase we should be using the shaded one, so could you please provide more information about the conflicts? What is the stack trace looks like?

Thanks.

ragarkar · 2023-05-05T04:51:32Z

Here is the stacktrace that is seen while starting the master node:

2022-11-17 10:32:26,423 ERROR org.apache.hadoop.hbase.master.HMaster: ***** ABORTING master atlas-zahf7j-master0.atlas-d7.l2ov-m7vs.int.cldr.work,16000,1668681139462: The coprocessor org.apache.atlas.hbase.hook.HBaseAtlasCoprocessor threw java.io.IOException: java.lang.InstantiationException: org.apache.atlas.hbase.hook.HBaseAtlasCoprocessor *****
java.io.IOException: java.lang.InstantiationException: org.apache.atlas.hbase.hook.HBaseAtlasCoprocessor
at org.apache.hadoop.hbase.coprocessor.CoprocessorHost.checkAndLoadInstance(CoprocessorHost.java:280)
at org.apache.hadoop.hbase.coprocessor.CoprocessorHost.loadSystemCoprocessors(CoprocessorHost.java:171)
at org.apache.hadoop.hbase.master.MasterCoprocessorHost.(MasterCoprocessorHost.java:155)
at org.apache.hadoop.hbase.master.HMaster.initializeCoprocessorHost(HMaster.java:3916)
at org.apache.hadoop.hbase.master.HMaster.finishActiveMasterInitialization(HMaster.java:895)
at org.apache.hadoop.hbase.master.HMaster.startActiveMasterManager(HMaster.java:2189)
at org.apache.hadoop.hbase.master.HMaster.lambda$run$0(HMaster.java:520)
at java.lang.Thread.run(Thread.java:750)
Caused by: java.lang.InstantiationException: org.apache.atlas.hbase.hook.HBaseAtlasCoprocessor
at org.apache.hadoop.hbase.master.MasterCoprocessorHost.checkAndGetInstance(MasterCoprocessorHost.java:189)
at org.apache.hadoop.hbase.master.MasterCoprocessorHost.checkAndGetInstance(MasterCoprocessorHost.java:70)
at org.apache.hadoop.hbase.coprocessor.CoprocessorHost.checkAndLoadInstance(CoprocessorHost.java:274)
... 7 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.hadoop.hbase.master.MasterCoprocessorHost.checkAndGetInstance(MasterCoprocessorHost.java:176)
... 9 more
Caused by: java.lang.AbstractMethodError: javax.ws.rs.core.UriBuilder.uri(Ljava/lang/String;)Ljavax/ws/rs/core/UriBuilder;
at javax.ws.rs.core.UriBuilder.fromUri(UriBuilder.java:96)
at org.apache.atlas.AtlasBaseClient.initializeState(AtlasBaseClient.java:483)
at org.apache.atlas.AtlasBaseClient.initializeState(AtlasBaseClient.java:469)
at org.apache.atlas.AtlasBaseClient.(AtlasBaseClient.java:143)
at org.apache.atlas.AtlasBaseClient.(AtlasBaseClient.java:139)
at org.apache.atlas.AtlasBaseClient.(AtlasBaseClient.java:135)
at org.apache.atlas.AtlasClientV2.(AtlasClientV2.java:146)
at org.apache.atlas.notification.rest.RestNotification.setupAtlasClientV2(RestNotification.java:88)
at org.apache.atlas.notification.rest.RestNotification.(RestNotification.java:65)
at org.apache.atlas.kafka.NotificationProvider.get(NotificationProvider.java:55)
at org.apache.atlas.hook.AtlasHook.(AtlasHook.java:107)
at org.apache.atlas.hbase.hook.HBaseAtlasCoprocessor.(HBaseAtlasCoprocessor.java:46)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at java.lang.Class.newInstance(Class.java:442)
at org.apache.atlas.hbase.hook.HBaseAtlasCoprocessor.init(HBaseAtlasCoprocessor.java:80)
at org.apache.atlas.hbase.hook.HBaseAtlasCoprocessor.(HBaseAtlasCoprocessor.java:60)
... 14 more

ragarkar · 2023-05-05T05:47:29Z

And we have shaded jersey in hbase-thirdparty and in hbase we should be using the shaded one, so could you please provide more information about the conflicts? What is the stack trace looks like?
Thanks.

Yes. I could see that hbase is using the shaded library, but it also adds the javax.ws.rs-api*.jar to the classpath while starting the server. Atlas co-processor on the other hand is using the non-shaded version of javax libraries which I think, is causing the conflict. Since HBase is not using the non-shaded version, I think, it's safe for HBase to not add it to the classpath. However, the library might be needed by some other components and hence, I am not sure if removing it from the bundle is safe or not.

Apache9 · 2023-05-05T06:22:35Z

The jars are required when running UTs, where we want to start mini MR cluster, IIRC.

For me I do not think we need to ship these jars, as we do not want to start a mini MR cluster even when starting a standalone mini hbase cluster.

But better ask this on the dev list. If no objections, we could remove these jars from the bundle.

Thanks.

…th javax.ws.rs.api jar

Apache-HBase · 2023-05-05T15:00:35Z

🎊 +1 overall

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+1 💚	@author	0m 0s	The patch does not contain any @author tags.
		_ master Compile Tests _
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		_ Patch Compile Tests _
+0 🆗	mvndep	0m 15s	Maven dependency ordering for patch
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+1 💚	javac	4m 38s	the patch passed
+1 💚	shellcheck	0m 2s	There were no new shellcheck issues.
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+1 💚	asflicense	0m 48s	The patch does not generate ASF License warnings.
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JIRA Issue	HBASE-27820
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Apache-HBase · 2023-05-05T18:56:34Z

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+1 💚	shadedjars	4m 43s	patch has no errors when building our shaded downstream artifacts.
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-1 ❌	unit	244m 0s	root in the patch failed.
		275m 55s

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GITHUB PR	#5210
JIRA Issue	HBASE-27820
Optional Tests	javac javadoc unit shadedjars compile
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Apache-HBase · 2023-05-05T20:17:10Z

💔 -1 overall

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+0 🆗	mvndep	0m 17s	Maven dependency ordering for branch
+1 💚	mvninstall	3m 7s	master passed
+1 💚	compile	1m 28s	master passed
+1 💚	shadedjars	4m 43s	branch has no errors when building our shaded downstream artifacts.
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+0 🆗	mvndep	0m 13s	Maven dependency ordering for patch
+1 💚	mvninstall	2m 49s	the patch passed
+1 💚	compile	1m 30s	the patch passed
+1 💚	javac	1m 30s	the patch passed
+1 💚	shadedjars	4m 42s	patch has no errors when building our shaded downstream artifacts.
+1 💚	javadoc	1m 53s	the patch passed
		_ Other Tests _
-1 ❌	unit	326m 56s	root in the patch failed.
		356m 41s

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GITHUB PR	#5210
JIRA Issue	HBASE-27820
Optional Tests	javac javadoc unit shadedjars compile
uname	Linux 0d2548fdf979 5.4.0-1099-aws #107~18.04.1-Ubuntu SMP Fri Mar 17 16:49:05 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
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ragarkar · 2023-05-09T05:52:17Z

Tests are failing with the following stacktrace:

[ERROR] org.apache.hadoop.hbase.mapreduce.TestHBaseMRTestingUtility.testMRYarnConfigsPopulation Time elapsed: 0.214 s <<< ERROR!
java.lang.NoClassDefFoundError: javax/ws/rs/WebApplicationException
at java.base/java.lang.ClassLoader.defineClass1(Native Method)
at java.base/java.lang.ClassLoader.defineClass(ClassLoader.java:1017)
at java.base/java.security.SecureClassLoader.defineClass(SecureClassLoader.java:174)
at java.base/jdk.internal.loader.BuiltinClassLoader.defineClass(BuiltinClassLoader.java:800)
at java.base/jdk.internal.loader.BuiltinClassLoader$4.run(BuiltinClassLoader.java:711)
at java.base/jdk.internal.loader.BuiltinClassLoader$4.run(BuiltinClassLoader.java:706)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/jdk.internal.loader.BuiltinClassLoader.findClassOnClassPathOrNull(BuiltinClassLoader.java:719)
at java.base/jdk.internal.loader.BuiltinClassLoader.loadClassOrNull(BuiltinClassLoader.java:621)
at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:579)
at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522)
at org.apache.hadoop.yarn.server.MiniYARNCluster.setNonHARMConfigurationWithEphemeralPorts(MiniYARNCluster.java:338)
at org.apache.hadoop.yarn.server.MiniYARNCluster.serviceInit(MiniYARNCluster.java:306)
at org.apache.hadoop.mapreduce.v2.MiniMRYarnCluster.serviceInit(MiniMRYarnCluster.java:211)
at org.apache.hadoop.service.AbstractService.init(AbstractService.java:164)
at org.apache.hadoop.mapred.MiniMRClientClusterFactory.create(MiniMRClientClusterFactory.java:80)
at org.apache.hadoop.mapred.MiniMRCluster.(MiniMRCluster.java:188)
at org.apache.hadoop.mapred.MiniMRCluster.(MiniMRCluster.java:176)
at org.apache.hadoop.mapred.MiniMRCluster.(MiniMRCluster.java:168)
at org.apache.hadoop.mapred.MiniMRCluster.(MiniMRCluster.java:129)
at org.apache.hadoop.hbase.HBaseTestingUtil.startMiniMapReduceCluster(HBaseTestingUtil.java:2352)
at org.apache.hadoop.hbase.HBaseTestingUtil.startMiniMapReduceCluster(HBaseTestingUtil.java:2285)
at org.apache.hadoop.hbase.mapreduce.TestHBaseMRTestingUtility.testMRYarnConfigsPopulation(TestHBaseMRTestingUtility.java:64)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.apache.hadoop.hbase.SystemExitRule$1.evaluate(SystemExitRule.java:39)
at org.junit.internal.runners.statements.FailOnTimeout$CallableStatement.call(FailOnTimeout.java:299)
at org.junit.internal.runners.statements.FailOnTimeout$CallableStatement.call(FailOnTimeout.java:293)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base/java.lang.Thread.run(Thread.java:829)
Caused by: java.lang.ClassNotFoundException: javax.ws.rs.WebApplicationException
at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:581)
at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:522)
... 47 more

ragarkar · 2023-05-09T10:09:42Z

@Apache9 I think, a fix is needed in apache/hadoop/yarn to remove these jars or use shaded jars to avoid this issue. Until, that is done, our builds will keep on failing with the above mentioned error. Do you think, we can go back to my original change to avoid adding the javax.ws.rs-api jar to the hbase classpath while starting?

Apache9 · 2023-05-09T15:05:39Z

This is a known issue. I mean we could try to exclude these jars in hbase-assembly?

…th javax.ws.rs.api jar

Apache-HBase · 2023-05-18T09:38:32Z

🎊 +1 overall

Vote	Subsystem	Runtime	Comment
+0 🆗	reexec	3m 26s	Docker mode activated.
		_ Prechecks _
+1 💚	dupname	0m 0s	No case conflicting files found.
+0 🆗	shelldocs	0m 0s	Shelldocs was not available.
+1 💚	@author	0m 0s	The patch does not contain any @author tags.
		_ master Compile Tests _
+0 🆗	mvndep	0m 18s	Maven dependency ordering for branch
+1 💚	mvninstall	3m 32s	master passed
+1 💚	compile	4m 44s	master passed
+1 💚	spotless	0m 42s	branch has no errors when running spotless:check.
		_ Patch Compile Tests _
+0 🆗	mvndep	0m 15s	Maven dependency ordering for patch
+1 💚	mvninstall	3m 18s	the patch passed
+1 💚	compile	4m 45s	the patch passed
+1 💚	javac	4m 45s	the patch passed
+1 💚	shellcheck	0m 1s	There were no new shellcheck issues.
+1 💚	whitespace	0m 0s	The patch has no whitespace issues.
+1 💚	xml	0m 7s	The patch has no ill-formed XML file.
+1 💚	hadoopcheck	12m 33s	Patch does not cause any errors with Hadoop 3.2.4 3.3.5.
+1 💚	spotless	0m 40s	patch has no errors when running spotless:check.
		_ Other Tests _
+1 💚	asflicense	0m 59s	The patch does not generate ASF License warnings.
		43m 2s

Subsystem	Report/Notes
Docker	ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/3/artifact/yetus-general-check/output/Dockerfile
GITHUB PR	#5210
JIRA Issue	HBASE-27820
Optional Tests	dupname asflicense spotless shellcheck shelldocs javac hadoopcheck xml compile
uname	Linux 318da376e8c8 5.4.0-144-generic #161-Ubuntu SMP Fri Feb 3 14:49:04 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
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Personality	dev-support/hbase-personality.sh
git revision	master / `93ddd70`
Default Java	Eclipse Adoptium-11.0.17+8
Max. process+thread count	86 (vs. ulimit of 30000)
modules	C: hbase-resource-bundle hbase-http hbase-mapreduce hbase-it hbase-rest . U: .
Console output	https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/3/console
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Apache-HBase · 2023-05-18T13:12:16Z

💔 -1 overall

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-0 ⚠️	yetus	0m 2s	Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
		_ Prechecks _
		_ master Compile Tests _
+0 🆗	mvndep	0m 18s	Maven dependency ordering for branch
+1 💚	mvninstall	3m 39s	master passed
+1 💚	compile	1m 43s	master passed
+1 💚	shadedjars	4m 44s	branch has no errors when building our shaded downstream artifacts.
+1 💚	javadoc	2m 31s	master passed
		_ Patch Compile Tests _
+0 🆗	mvndep	0m 13s	Maven dependency ordering for patch
+1 💚	mvninstall	3m 20s	the patch passed
+1 💚	compile	1m 44s	the patch passed
+1 💚	javac	1m 44s	the patch passed
+1 💚	shadedjars	4m 42s	patch has no errors when building our shaded downstream artifacts.
+1 💚	javadoc	2m 34s	the patch passed
		_ Other Tests _
-1 ❌	unit	225m 54s	root in the patch failed.
		256m 44s

Subsystem	Report/Notes
Docker	ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/3/artifact/yetus-jdk11-hadoop3-check/output/Dockerfile
GITHUB PR	#5210
JIRA Issue	HBASE-27820
Optional Tests	javac javadoc unit shadedjars compile
uname	Linux 1578f5f4d0ec 5.4.0-1101-aws #109~18.04.1-Ubuntu SMP Mon Apr 24 20:40:49 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
Build tool	maven
Personality	dev-support/hbase-personality.sh
git revision	master / `93ddd70`
Default Java	Eclipse Adoptium-11.0.17+8
unit	https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/3/artifact/yetus-jdk11-hadoop3-check/output/patch-unit-root.txt
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modules	C: hbase-resource-bundle hbase-http hbase-mapreduce hbase-it hbase-rest . U: .
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Apache-HBase · 2023-05-18T15:01:41Z

💔 -1 overall

Vote	Subsystem	Runtime	Comment
+0 🆗	reexec	3m 25s	Docker mode activated.
-0 ⚠️	yetus	0m 2s	Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
		_ Prechecks _
		_ master Compile Tests _
+0 🆗	mvndep	0m 18s	Maven dependency ordering for branch
+1 💚	mvninstall	3m 4s	master passed
+1 💚	compile	1m 27s	master passed
+1 💚	shadedjars	4m 40s	branch has no errors when building our shaded downstream artifacts.
+1 💚	javadoc	2m 4s	master passed
		_ Patch Compile Tests _
+0 🆗	mvndep	0m 13s	Maven dependency ordering for patch
+1 💚	mvninstall	2m 48s	the patch passed
+1 💚	compile	1m 29s	the patch passed
+1 💚	javac	1m 29s	the patch passed
+1 💚	shadedjars	4m 41s	patch has no errors when building our shaded downstream artifacts.
+1 💚	javadoc	2m 6s	the patch passed
		_ Other Tests _
-1 ❌	unit	334m 59s	root in the patch failed.
		366m 5s

Subsystem	Report/Notes
Docker	ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/3/artifact/yetus-jdk8-hadoop3-check/output/Dockerfile
GITHUB PR	#5210
JIRA Issue	HBASE-27820
Optional Tests	javac javadoc unit shadedjars compile
uname	Linux a586b2a41e29 5.4.0-1099-aws #107~18.04.1-Ubuntu SMP Fri Mar 17 16:49:05 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
Build tool	maven
Personality	dev-support/hbase-personality.sh
git revision	master / `93ddd70`
Default Java	Temurin-1.8.0_352-b08
unit	https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/3/artifact/yetus-jdk8-hadoop3-check/output/patch-unit-root.txt
Test Results	https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/3/testReport/
Max. process+thread count	5170 (vs. ulimit of 30000)
modules	C: hbase-resource-bundle hbase-http hbase-mapreduce hbase-it hbase-rest . U: .
Console output	https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/3/console
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ragarkar · 2023-05-23T07:28:36Z

The test failures seen above are because of timeouts. Is it possible to either suppress these errors or rerun the tests to see if they pass during rerun?

[ERROR] org.apache.hadoop.hbase.io.hfile.TestBlockEvictionOnRegionMovement Time elapsed: 772.781 s <<< ERROR!
org.junit.runners.model.TestTimedOutException: test timed out after 780 seconds
at java.base@11.0.17/java.lang.Object.wait(Native Method)
at java.base@11.0.17/java.lang.Thread.join(Thread.java:1308)
at app//org.apache.hadoop.hbase.util.Threads.threadDumpingIsAlive(Threads.java:111)
at app//org.apache.hadoop.hbase.LocalHBaseCluster.join(LocalHBaseCluster.java:396)
at app//org.apache.hadoop.hbase.SingleProcessHBaseCluster.waitUntilShutDown(SingleProcessHBaseCluster.java:886)
at app//org.apache.hadoop.hbase.HBaseTestingUtil.shutdownMiniHBaseCluster(HBaseTestingUtil.java:1060)
at app//org.apache.hadoop.hbase.HBaseTestingUtil.shutdownMiniCluster(HBaseTestingUtil.java:1042)
at app//org.apache.hadoop.hbase.io.hfile.TestBlockEvictionOnRegionMovement.tearDown(TestBlockEvictionOnRegionMovement.java:173)
at java.base@11.0.17/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base@11.0.17/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base@11.0.17/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base@11.0.17/java.lang.reflect.Method.invoke(Method.java:566)
at app//org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at app//org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at app//org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at app//org.junit.internal.runners.statements.RunAfters.invokeMethod(RunAfters.java:46)
at app//org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:33)
at app//org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at app//org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at app//org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at app//org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at app//org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at app//org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at app//org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
at app//org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at app//org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at app//org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at app//org.junit.internal.runners.statements.FailOnTimeout$CallableStatement.call(FailOnTimeout.java:299)
at app//org.junit.internal.runners.statements.FailOnTimeout$CallableStatement.call(FailOnTimeout.java:293)
at java.base@11.0.17/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at java.base@11.0.17/java.lang.Thread.run(Thread.java:829)

[ERROR] org.apache.hadoop.hbase.replication.TestReplicationSmallTests.testGetReplicationPeerState[0: serialPeer=true] Time elapsed: 606.411 s <<< ERROR!
org.apache.hadoop.hbase.exceptions.TimeoutIOException: java.util.concurrent.TimeoutException
at org.apache.hadoop.hbase.util.FutureUtils.get(FutureUtils.java:202)
at org.apache.hadoop.hbase.client.Admin.removeReplicationPeer(Admin.java:1998)
at org.apache.hadoop.hbase.replication.TestReplicationBase.removePeer(TestReplicationBase.java:309)
at org.apache.hadoop.hbase.replication.TestReplicationBase.tearDownBase(TestReplicationBase.java:315)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
at org.junit.internal.runners.statements.RunAfters.invokeMethod(RunAfters.java:46)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:33)
at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
at org.junit.runners.Suite.runChild(Suite.java:128)
at org.junit.runners.Suite.runChild(Suite.java:27)
at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:27)
at org.junit.internal.runners.statements.FailOnTimeout$CallableStatement.call(FailOnTimeout.java:299)
at org.junit.internal.runners.statements.FailOnTimeout$CallableStatement.call(FailOnTimeout.java:293)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.lang.Thread.run(Thread.java:750)
Caused by: java.util.concurrent.TimeoutException
at java.util.concurrent.CompletableFuture.timedGet(CompletableFuture.java:1784)
at java.util.concurrent.CompletableFuture.get(CompletableFuture.java:1928)
at org.apache.hadoop.hbase.util.FutureUtils.get(FutureUtils.java:196)
... 36 more

ragarkar · 2023-05-23T07:28:50Z

retest

ragarkar · 2023-05-24T15:09:51Z

@Apache9 , can you please take a look at the latest patch? The changes essentially avoid adding the javax.ws.rs-api jar to the bundle. There are couple of test failures reported during the test runs, but they are all timeout exceptions which I believe might be flaky and may go away on a rerun. Can we trigger a rerun to check that?

ankitsinghal · 2023-05-30T05:53:51Z

@ragarkar , the changes look good to me

I have re-triggered the Precommit job , let's see how the test responds, but it will be wise if you can execute the failed tests locally to confirm the same meanwhile

Apache-HBase · 2023-05-30T06:20:44Z

🎊 +1 overall

Vote	Subsystem	Runtime	Comment
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		_ Prechecks _
+1 💚	dupname	0m 0s	No case conflicting files found.
+0 🆗	shelldocs	0m 0s	Shelldocs was not available.
+1 💚	@author	0m 0s	The patch does not contain any @author tags.
		_ master Compile Tests _
+0 🆗	mvndep	0m 12s	Maven dependency ordering for branch
+1 💚	mvninstall	2m 46s	master passed
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		_ Patch Compile Tests _
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+1 💚	compile	4m 40s	the patch passed
+1 💚	javac	4m 40s	the patch passed
+1 💚	shellcheck	0m 0s	There were no new shellcheck issues.
+1 💚	whitespace	0m 0s	The patch has no whitespace issues.
+1 💚	xml	0m 7s	The patch has no ill-formed XML file.
+1 💚	hadoopcheck	9m 6s	Patch does not cause any errors with Hadoop 3.2.4 3.3.5.
+1 💚	spotless	0m 41s	patch has no errors when running spotless:check.
		_ Other Tests _
+1 💚	asflicense	0m 50s	The patch does not generate ASF License warnings.
		33m 30s

Subsystem	Report/Notes
Docker	ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/4/artifact/yetus-general-check/output/Dockerfile
GITHUB PR	#5210
JIRA Issue	HBASE-27820
Optional Tests	dupname asflicense spotless shellcheck shelldocs javac hadoopcheck xml compile
uname	Linux a13f317b7108 5.4.0-144-generic #161-Ubuntu SMP Fri Feb 3 14:49:04 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
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Apache-HBase · 2023-05-30T10:05:35Z

💔 -1 overall

Vote	Subsystem	Runtime	Comment
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		_ Prechecks _
		_ master Compile Tests _
+0 🆗	mvndep	0m 18s	Maven dependency ordering for branch
+1 💚	mvninstall	2m 58s	master passed
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+1 💚	shadedjars	4m 58s	branch has no errors when building our shaded downstream artifacts.
+1 💚	javadoc	2m 31s	master passed
		_ Patch Compile Tests _
+0 🆗	mvndep	0m 13s	Maven dependency ordering for patch
+1 💚	mvninstall	2m 33s	the patch passed
+1 💚	compile	1m 46s	the patch passed
+1 💚	javac	1m 46s	the patch passed
+1 💚	shadedjars	4m 53s	patch has no errors when building our shaded downstream artifacts.
+1 💚	javadoc	2m 32s	the patch passed
		_ Other Tests _
-1 ❌	unit	228m 34s	root in the patch failed.
		258m 17s

Subsystem	Report/Notes
Docker	ClientAPI=1.43 ServerAPI=1.43 base: https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/4/artifact/yetus-jdk11-hadoop3-check/output/Dockerfile
GITHUB PR	#5210
JIRA Issue	HBASE-27820
Optional Tests	javac javadoc unit shadedjars compile
uname	Linux 08a46b90a3df 5.4.0-1101-aws #109~18.04.1-Ubuntu SMP Mon Apr 24 20:40:49 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
Build tool	maven
Personality	dev-support/hbase-personality.sh
git revision	master / `79c985f`
Default Java	Eclipse Adoptium-11.0.17+8
unit	https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/4/artifact/yetus-jdk11-hadoop3-check/output/patch-unit-root.txt
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ragarkar · 2023-05-30T12:25:33Z

@ankitsinghal, I have verified that the tests pass in the local builds.

Apache-HBase · 2023-05-30T13:10:31Z

💔 -1 overall

Vote	Subsystem	Runtime	Comment
+0 🆗	reexec	0m 28s	Docker mode activated.
-0 ⚠️	yetus	0m 3s	Unprocessed flag(s): --brief-report-file --spotbugs-strict-precheck --whitespace-eol-ignore-list --whitespace-tabs-ignore-list --quick-hadoopcheck
		_ Prechecks _
		_ master Compile Tests _
+0 🆗	mvndep	0m 14s	Maven dependency ordering for branch
+1 💚	mvninstall	2m 25s	master passed
+1 💚	compile	1m 29s	master passed
+1 💚	shadedjars	4m 53s	branch has no errors when building our shaded downstream artifacts.
+1 💚	javadoc	2m 3s	master passed
		_ Patch Compile Tests _
+0 🆗	mvndep	0m 14s	Maven dependency ordering for patch
+1 💚	mvninstall	2m 11s	the patch passed
+1 💚	compile	1m 38s	the patch passed
+1 💚	javac	1m 38s	the patch passed
+1 💚	shadedjars	4m 52s	patch has no errors when building our shaded downstream artifacts.
+1 💚	javadoc	2m 3s	the patch passed
		_ Other Tests _
-1 ❌	unit	415m 16s	root in the patch failed.
		443m 14s

Subsystem	Report/Notes
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GITHUB PR	#5210
JIRA Issue	HBASE-27820
Optional Tests	javac javadoc unit shadedjars compile
uname	Linux 83faee7b1d35 5.4.0-1099-aws #107~18.04.1-Ubuntu SMP Fri Mar 17 16:49:05 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
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Personality	dev-support/hbase-personality.sh
git revision	master / `79c985f`
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unit	https://ci-hbase.apache.org/job/HBase-PreCommit-GitHub-PR/job/PR-5210/4/artifact/yetus-jdk8-hadoop3-check/output/patch-unit-root.txt
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Apache9 · 2023-05-30T13:35:43Z

In this way we will not ship the java ws api jar in hbase-assembly?

wchevreuil

LGTM. I can see the related jar is not in the generated tarball anymore, whilst current master version still bundles it.

#5210) Signed-off-by: Wellington Chevreuil <wchevreuil@apache.org> Signed-off-by: Duo Zhang <zhangduo@apache.org> Signed-off-by: Ankit Singhal <ankit@apache.org> (cherry picked from commit 7cc15fc)

#5210) (#5261) Signed-off-by: Wellington Chevreuil <wchevreuil@apache.org>

apache#5210) (apache#5261) Signed-off-by: Wellington Chevreuil <wchevreuil@apache.org> (cherry picked from commit 61a876f) Change-Id: I481fd8396d1ea0bf6fae884d9ef06f9cc8a6fa5f

…conflicts wi… (apache#5210) (apache#5261) Signed-off-by: Wellington Chevreuil <wchevreuil@apache.org> (cherry picked from commit 61a876f) Change-Id: I481fd8396d1ea0bf6fae884d9ef06f9cc8a6fa5f (cherry picked from commit ba7b4a2)

HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
311e12e
…th javax.ws.rs.api jar

HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
1e5b8c8
…th javax.ws.rs.api jar

HBASE-27820: HBase is not starting due to Jersey library conflicts wi…
bc606b0
…th javax.ws.rs.api jar

wchevreuil approved these changes May 30, 2023
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ankitsinghal approved these changes May 30, 2023
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Apache9 approved these changes May 31, 2023
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wchevreuil merged commit 7cc15fc into apache:masterMay 31, 2023

ragarkar mentioned this pull request Jun 1, 2023
HBASE-27820: HBase is not starting due to Jersey library conflicts wi… #5261
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wchevreuil pushed a commit that referenced this pull request Jun 1, 2023
HBASE-27820: HBase is not starting due to Jersey library conflicts wi… (
61a876f
#5210) (#5261) Signed-off-by: Wellington Chevreuil <wchevreuil@apache.org>

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ragarkar commented Apr 28, 2023•
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