Bacterial population genetics

JAX prototype of TOMBOMBADIL

rust port of the mandrake (stochastic cluster embedding) algorithm

In-browser tools for bacterial genome analysis 🦅

AMR detection, WebAssembly ready, and AMRFinderPlus DB-compatible, on Rust

Crate to work with de Bruijn graphs on Rust, using petgraph

Short-read assembler for bacterial genomics based on a de Bruijn graph written in Rust 🦅

Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding

rust reimplementation of PopPUNK

Fast sequence distance estimates