Pinned Loading

1. Gibbons-Lab/mbtoolsGibbons-Lab/mbtoolsPublic

   R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.

   R 25 9

2. micom-dev/micommicom-dev/micomPublic

   Python package to study microbial communities using metabolic modeling.

   Python 135 23

3. opencobra/cobrapyopencobra/cobrapyPublic

   COBRApy is a package for constraint-based modeling of metabolic networks.

   Python 578 238

4. resendislab/cordaresendislab/cordaPublic

   An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

   Python 26 8

5. Convert image to ascii artConvert image to ascii art

   1

   importsys; fromPILimportImage; importnumpyasnp

   2

   3

   chars=np.asarray(list(' .,:;irsXA253hMHGS#9B&@'))

   4

   5

   iflen(sys.argv) !=4: print( 'Usage: ./asciinator.py image scale factor' ); sys.exit()

6. Gibbons-Lab/isb_course_2022Gibbons-Lab/isb_course_2022Public

   Materials and presentation for the 2022 ISB Microbiome course.

   Jupyter Notebook 27 13