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denoise

Command-line tool to remove shot noise from astronomical images and cubes.

Install

brew tap danieljprice/all
brew install denoise

Usage

denoise image.fits [out.fits]

Advanced usage

Type denoise with no arguments to see the command line options:

denoise: a SPLASH imaging utility (c) 2020 Daniel Price
Usage: denoise [options] infile.fits [outfile.fits]
Options: --imax=3.4e-2 [intensity value above which no smoothing is applied]
--beam=1.0 [beam size in pixels at max intensity]
--its=4 [maximum number of smoothing length iterations]
--use3D=1 [denoise in 3D for spectral cubes]
--start=1 [denoise from channel 1 onwards]
--end=10 [denoise only up to channel 10]

The main one is the --beam argument which sets the minimum beam size (in number of pixels). The default is beam=1.0 which gives no smoothing of the image at the maximum intensity.

Status

build

Installing from source

To compile denoise from source you will need a Fortran compiler (gfortran) and the cfitsio library. Then compile denoise as follows:

git clone --recurse-submodules https://github.com/danieljprice/denoise
export SYSTEM=gfortran
make
make install

If you need to specify the path to the cfitsio library, either set LD_LIBRARY_FLAGS, or the FITS_DIR environment variable to the location where the file libcfitsio.so can be found, e.g.

make FITS_DIR=$HOME/lib

Examples

MWC758 with VLT-SPHERE, from Benisty et al. (2015), before (left) and after (right) denoising MWC758, from Benisty et al. (2015), before (left) and after (right) denoising

UX Tau with VLT-SPHERE, from Ménard et al. (2020), before and after UX Tau, from Ménard et al. (2020), before and after

HD97048 with ALMA (mm/radio image), from Pinte et al. (2019): HD97048, from Pinte et al. (2019)

About this repo

Denoise is officially part of splash (https://github.com/danieljprice/splash). This repository is a standalone version of denoise that is updated with each stable release of splash that affects the relevant source files. Pull requests to this repo will also be incorporated back into the main splash source code.

Updating the enclosed copy of splash source files to the latest

To update the included `submodule' of the splash source code in the denoise repository, use:

git submodule update --remote

About

Removes shot noise from astronomical images using adaptive kernels

Resources

Readme
GPL-2.0 license
Activity

Stars

18 stars

Watchers

2 watching

Forks

0 forks
Report repository

Releases

Packages

Used by

Contributors

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GitHub - danieljprice/denoise: Removes shot noise from astronomical images using adaptive kernels · GitHub
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denoise
Command-line tool to remove shot noise from astronomical images and cubes.
Install
brew tap danieljprice/all
brew install denoise

Usage
denoise image.fits [out.fits]

Advanced usage
Type denoise with no arguments to see the command line options:
denoise: a SPLASH imaging utility (c) 2020 Daniel Price
Usage: denoise [options] infile.fits [outfile.fits]
Options: --imax=3.4e-2 [intensity value above which no smoothing is applied]
--beam=1.0 [beam size in pixels at max intensity]
--its=4 [maximum number of smoothing length iterations]
--use3D=1 [denoise in 3D for spectral cubes]
--start=1 [denoise from channel 1 onwards]
--end=10 [denoise only up to channel 10]

The main one is the --beam argument which sets the minimum beam size (in number of pixels). The default is beam=1.0 which gives no smoothing of the image at the maximum intensity.
Status
build
Installing from source
To compile denoise from source you will need a Fortran compiler (gfortran)
and the cfitsio library. Then compile denoise as follows:
git clone --recurse-submodules https://github.com/danieljprice/denoise
export SYSTEM=gfortran
make
make install

If you need to specify the path to the cfitsio library, either set LD_LIBRARY_FLAGS, or the FITS_DIR environment variable to the location where the file libcfitsio.so can be found, e.g.
make FITS_DIR=$HOME/lib

Examples
MWC758 with VLT-SPHERE, from Benisty et al. (2015), before (left) and after (right) denoising
MWC758, from Benisty et al. (2015), before (left) and after (right) denoising
UX Tau with VLT-SPHERE, from Ménard et al. (2020), before and after
UX Tau, from Ménard et al. (2020), before and after
HD97048 with ALMA (mm/radio image), from Pinte et al. (2019):
HD97048, from Pinte et al. (2019)
About this repo
Denoise is officially part of splash (https://github.com/danieljprice/splash). This repository is a standalone version of denoise that is updated with each stable release of splash that affects the relevant source files. Pull requests to this repo will also be incorporated back into the main splash source code.
Updating the enclosed copy of splash source files to the latest
To update the included `submodule' of the splash source code in the denoise repository, use:
git submodule update --remote

About
Removes shot noise from astronomical images using adaptive kernels
Resources
Readme
GPL-2.0 license
Activity
Stars
18 stars
Watchers
2 watching
Forks
0 forks
Report repository
Releases
Packages
Used by
Contributors
Languages

, 'i');
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GitHub - danieljprice/denoise: Removes shot noise from astronomical images using adaptive kernels · GitHub
Skip to content
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Repository files navigation
denoise
Command-line tool to remove shot noise from astronomical images and cubes.
Install
brew tap danieljprice/all
brew install denoise

Usage
denoise image.fits [out.fits]

Advanced usage
Type denoise with no arguments to see the command line options:
denoise: a SPLASH imaging utility (c) 2020 Daniel Price
Usage: denoise [options] infile.fits [outfile.fits]
Options: --imax=3.4e-2 [intensity value above which no smoothing is applied]
--beam=1.0 [beam size in pixels at max intensity]
--its=4 [maximum number of smoothing length iterations]
--use3D=1 [denoise in 3D for spectral cubes]
--start=1 [denoise from channel 1 onwards]
--end=10 [denoise only up to channel 10]

The main one is the --beam argument which sets the minimum beam size (in number of pixels). The default is beam=1.0 which gives no smoothing of the image at the maximum intensity.
Status
build
Installing from source
To compile denoise from source you will need a Fortran compiler (gfortran)
and the cfitsio library. Then compile denoise as follows:
git clone --recurse-submodules https://github.com/danieljprice/denoise
export SYSTEM=gfortran
make
make install

If you need to specify the path to the cfitsio library, either set LD_LIBRARY_FLAGS, or the FITS_DIR environment variable to the location where the file libcfitsio.so can be found, e.g.
make FITS_DIR=$HOME/lib

Examples
MWC758 with VLT-SPHERE, from Benisty et al. (2015), before (left) and after (right) denoising
MWC758, from Benisty et al. (2015), before (left) and after (right) denoising
UX Tau with VLT-SPHERE, from Ménard et al. (2020), before and after
UX Tau, from Ménard et al. (2020), before and after
HD97048 with ALMA (mm/radio image), from Pinte et al. (2019):
HD97048, from Pinte et al. (2019)
About this repo
Denoise is officially part of splash (https://github.com/danieljprice/splash). This repository is a standalone version of denoise that is updated with each stable release of splash that affects the relevant source files. Pull requests to this repo will also be incorporated back into the main splash source code.
Updating the enclosed copy of splash source files to the latest
To update the included `submodule' of the splash source code in the denoise repository, use:
git submodule update --remote

About
Removes shot noise from astronomical images using adaptive kernels
Resources
Readme
GPL-2.0 license
Activity
Stars
18 stars
Watchers
2 watching
Forks
0 forks
Report repository
Releases
Packages
Used by
Contributors
Languages

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var __re = new RegExp('^' + ".*" + '
GitHub - danieljprice/denoise: Removes shot noise from astronomical images using adaptive kernels · GitHub
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denoise
Command-line tool to remove shot noise from astronomical images and cubes.
Install
brew tap danieljprice/all
brew install denoise

Usage
denoise image.fits [out.fits]

Advanced usage
Type denoise with no arguments to see the command line options:
denoise: a SPLASH imaging utility (c) 2020 Daniel Price
Usage: denoise [options] infile.fits [outfile.fits]
Options: --imax=3.4e-2 [intensity value above which no smoothing is applied]
--beam=1.0 [beam size in pixels at max intensity]
--its=4 [maximum number of smoothing length iterations]
--use3D=1 [denoise in 3D for spectral cubes]
--start=1 [denoise from channel 1 onwards]
--end=10 [denoise only up to channel 10]

The main one is the --beam argument which sets the minimum beam size (in number of pixels). The default is beam=1.0 which gives no smoothing of the image at the maximum intensity.
Status
build
Installing from source
To compile denoise from source you will need a Fortran compiler (gfortran)
and the cfitsio library. Then compile denoise as follows:
git clone --recurse-submodules https://github.com/danieljprice/denoise
export SYSTEM=gfortran
make
make install

If you need to specify the path to the cfitsio library, either set LD_LIBRARY_FLAGS, or the FITS_DIR environment variable to the location where the file libcfitsio.so can be found, e.g.
make FITS_DIR=$HOME/lib

Examples
MWC758 with VLT-SPHERE, from Benisty et al. (2015), before (left) and after (right) denoising
MWC758, from Benisty et al. (2015), before (left) and after (right) denoising
UX Tau with VLT-SPHERE, from Ménard et al. (2020), before and after
UX Tau, from Ménard et al. (2020), before and after
HD97048 with ALMA (mm/radio image), from Pinte et al. (2019):
HD97048, from Pinte et al. (2019)
About this repo
Denoise is officially part of splash (https://github.com/danieljprice/splash). This repository is a standalone version of denoise that is updated with each stable release of splash that affects the relevant source files. Pull requests to this repo will also be incorporated back into the main splash source code.
Updating the enclosed copy of splash source files to the latest
To update the included `submodule' of the splash source code in the denoise repository, use:
git submodule update --remote

About
Removes shot noise from astronomical images using adaptive kernels
Resources
Readme
GPL-2.0 license
Activity
Stars
18 stars
Watchers
2 watching
Forks
0 forks
Report repository
Releases
Packages
Used by
Contributors
Languages

, 'i');
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GitHub - danieljprice/denoise: Removes shot noise from astronomical images using adaptive kernels · GitHub
Skip to content
BranchesTags
Repository files navigation
denoise
Command-line tool to remove shot noise from astronomical images and cubes.
Install
brew tap danieljprice/all
brew install denoise

Usage
denoise image.fits [out.fits]

Advanced usage
Type denoise with no arguments to see the command line options:
denoise: a SPLASH imaging utility (c) 2020 Daniel Price
Usage: denoise [options] infile.fits [outfile.fits]
Options: --imax=3.4e-2 [intensity value above which no smoothing is applied]
--beam=1.0 [beam size in pixels at max intensity]
--its=4 [maximum number of smoothing length iterations]
--use3D=1 [denoise in 3D for spectral cubes]
--start=1 [denoise from channel 1 onwards]
--end=10 [denoise only up to channel 10]

The main one is the --beam argument which sets the minimum beam size (in number of pixels). The default is beam=1.0 which gives no smoothing of the image at the maximum intensity.
Status
build
Installing from source
To compile denoise from source you will need a Fortran compiler (gfortran)
and the cfitsio library. Then compile denoise as follows:
git clone --recurse-submodules https://github.com/danieljprice/denoise
export SYSTEM=gfortran
make
make install

If you need to specify the path to the cfitsio library, either set LD_LIBRARY_FLAGS, or the FITS_DIR environment variable to the location where the file libcfitsio.so can be found, e.g.
make FITS_DIR=$HOME/lib

Examples
MWC758 with VLT-SPHERE, from Benisty et al. (2015), before (left) and after (right) denoising
MWC758, from Benisty et al. (2015), before (left) and after (right) denoising
UX Tau with VLT-SPHERE, from Ménard et al. (2020), before and after
UX Tau, from Ménard et al. (2020), before and after
HD97048 with ALMA (mm/radio image), from Pinte et al. (2019):
HD97048, from Pinte et al. (2019)
About this repo
Denoise is officially part of splash (https://github.com/danieljprice/splash). This repository is a standalone version of denoise that is updated with each stable release of splash that affects the relevant source files. Pull requests to this repo will also be incorporated back into the main splash source code.
Updating the enclosed copy of splash source files to the latest
To update the included `submodule' of the splash source code in the denoise repository, use:
git submodule update --remote

About
Removes shot noise from astronomical images using adaptive kernels
Resources
Readme
GPL-2.0 license
Activity
Stars
18 stars
Watchers
2 watching
Forks
0 forks
Report repository
Releases
Packages
Used by
Contributors
Languages

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GitHub - danieljprice/denoise: Removes shot noise from astronomical images using adaptive kernels · GitHub
Skip to content
BranchesTags
Repository files navigation
denoise
Command-line tool to remove shot noise from astronomical images and cubes.
Install
brew tap danieljprice/all
brew install denoise

Usage
denoise image.fits [out.fits]

Advanced usage
Type denoise with no arguments to see the command line options:
denoise: a SPLASH imaging utility (c) 2020 Daniel Price
Usage: denoise [options] infile.fits [outfile.fits]
Options: --imax=3.4e-2 [intensity value above which no smoothing is applied]
--beam=1.0 [beam size in pixels at max intensity]
--its=4 [maximum number of smoothing length iterations]
--use3D=1 [denoise in 3D for spectral cubes]
--start=1 [denoise from channel 1 onwards]
--end=10 [denoise only up to channel 10]

The main one is the --beam argument which sets the minimum beam size (in number of pixels). The default is beam=1.0 which gives no smoothing of the image at the maximum intensity.
Status
build
Installing from source
To compile denoise from source you will need a Fortran compiler (gfortran)
and the cfitsio library. Then compile denoise as follows:
git clone --recurse-submodules https://github.com/danieljprice/denoise
export SYSTEM=gfortran
make
make install

If you need to specify the path to the cfitsio library, either set LD_LIBRARY_FLAGS, or the FITS_DIR environment variable to the location where the file libcfitsio.so can be found, e.g.
make FITS_DIR=$HOME/lib

Examples
MWC758 with VLT-SPHERE, from Benisty et al. (2015), before (left) and after (right) denoising
MWC758, from Benisty et al. (2015), before (left) and after (right) denoising
UX Tau with VLT-SPHERE, from Ménard et al. (2020), before and after
UX Tau, from Ménard et al. (2020), before and after
HD97048 with ALMA (mm/radio image), from Pinte et al. (2019):
HD97048, from Pinte et al. (2019)
About this repo
Denoise is officially part of splash (https://github.com/danieljprice/splash). This repository is a standalone version of denoise that is updated with each stable release of splash that affects the relevant source files. Pull requests to this repo will also be incorporated back into the main splash source code.
Updating the enclosed copy of splash source files to the latest
To update the included `submodule' of the splash source code in the denoise repository, use:
git submodule update --remote

About
Removes shot noise from astronomical images using adaptive kernels
Resources
Readme
GPL-2.0 license
Activity
Stars
18 stars
Watchers
2 watching
Forks
0 forks
Report repository
Releases
Packages
Used by
Contributors
Languages

, 'i');
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GitHub - danieljprice/denoise: Removes shot noise from astronomical images using adaptive kernels · GitHub
Skip to content
BranchesTags
Repository files navigation
denoise
Command-line tool to remove shot noise from astronomical images and cubes.
Install
brew tap danieljprice/all
brew install denoise

Usage
denoise image.fits [out.fits]

Advanced usage
Type denoise with no arguments to see the command line options:
denoise: a SPLASH imaging utility (c) 2020 Daniel Price
Usage: denoise [options] infile.fits [outfile.fits]
Options: --imax=3.4e-2 [intensity value above which no smoothing is applied]
--beam=1.0 [beam size in pixels at max intensity]
--its=4 [maximum number of smoothing length iterations]
--use3D=1 [denoise in 3D for spectral cubes]
--start=1 [denoise from channel 1 onwards]
--end=10 [denoise only up to channel 10]

The main one is the --beam argument which sets the minimum beam size (in number of pixels). The default is beam=1.0 which gives no smoothing of the image at the maximum intensity.
Status
build
Installing from source
To compile denoise from source you will need a Fortran compiler (gfortran)
and the cfitsio library. Then compile denoise as follows:
git clone --recurse-submodules https://github.com/danieljprice/denoise
export SYSTEM=gfortran
make
make install

If you need to specify the path to the cfitsio library, either set LD_LIBRARY_FLAGS, or the FITS_DIR environment variable to the location where the file libcfitsio.so can be found, e.g.
make FITS_DIR=$HOME/lib

Examples
MWC758 with VLT-SPHERE, from Benisty et al. (2015), before (left) and after (right) denoising
MWC758, from Benisty et al. (2015), before (left) and after (right) denoising
UX Tau with VLT-SPHERE, from Ménard et al. (2020), before and after
UX Tau, from Ménard et al. (2020), before and after
HD97048 with ALMA (mm/radio image), from Pinte et al. (2019):
HD97048, from Pinte et al. (2019)
About this repo
Denoise is officially part of splash (https://github.com/danieljprice/splash). This repository is a standalone version of denoise that is updated with each stable release of splash that affects the relevant source files. Pull requests to this repo will also be incorporated back into the main splash source code.
Updating the enclosed copy of splash source files to the latest
To update the included `submodule' of the splash source code in the denoise repository, use:
git submodule update --remote

About
Removes shot noise from astronomical images using adaptive kernels
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GitHub - danieljprice/denoise: Removes shot noise from astronomical images using adaptive kernels · GitHub
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denoise
Command-line tool to remove shot noise from astronomical images and cubes.
Install
brew tap danieljprice/all
brew install denoise

Usage
denoise image.fits [out.fits]

Advanced usage
Type denoise with no arguments to see the command line options:
denoise: a SPLASH imaging utility (c) 2020 Daniel Price
Usage: denoise [options] infile.fits [outfile.fits]
Options: --imax=3.4e-2 [intensity value above which no smoothing is applied]
--beam=1.0 [beam size in pixels at max intensity]
--its=4 [maximum number of smoothing length iterations]
--use3D=1 [denoise in 3D for spectral cubes]
--start=1 [denoise from channel 1 onwards]
--end=10 [denoise only up to channel 10]

The main one is the --beam argument which sets the minimum beam size (in number of pixels). The default is beam=1.0 which gives no smoothing of the image at the maximum intensity.
Status
build
Installing from source
To compile denoise from source you will need a Fortran compiler (gfortran)
and the cfitsio library. Then compile denoise as follows:
git clone --recurse-submodules https://github.com/danieljprice/denoise
export SYSTEM=gfortran
make
make install

If you need to specify the path to the cfitsio library, either set LD_LIBRARY_FLAGS, or the FITS_DIR environment variable to the location where the file libcfitsio.so can be found, e.g.
make FITS_DIR=$HOME/lib

Examples
MWC758 with VLT-SPHERE, from Benisty et al. (2015), before (left) and after (right) denoising
MWC758, from Benisty et al. (2015), before (left) and after (right) denoising
UX Tau with VLT-SPHERE, from Ménard et al. (2020), before and after
UX Tau, from Ménard et al. (2020), before and after
HD97048 with ALMA (mm/radio image), from Pinte et al. (2019):
HD97048, from Pinte et al. (2019)
About this repo
Denoise is officially part of splash (https://github.com/danieljprice/splash). This repository is a standalone version of denoise that is updated with each stable release of splash that affects the relevant source files. Pull requests to this repo will also be incorporated back into the main splash source code.
Updating the enclosed copy of splash source files to the latest
To update the included `submodule' of the splash source code in the denoise repository, use:
git submodule update --remote

About
Removes shot noise from astronomical images using adaptive kernels
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Readme
GPL-2.0 license
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