Dewey Lab

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

MetaSRA API + website back-end

MetaSRA: normalized metadata for the Sequence Read Archive

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Code implementing experiments described in "Hierarchical cell type classification using mass, heterogeneous RNA-seq data from human primary cells"

The deweylab website

DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation