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Achievement: Pull SharkAchievement: Arctic Code Vault ContributorAchievement: Starstruck

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Achievement: Pull SharkAchievement: Arctic Code Vault ContributorAchievement: Starstruck

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@deweylab

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  1. deweylab/MetaSRA-pipelinedeweylab/MetaSRA-pipelinePublic

    MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

    Python 47 15

  2. deweylab/CellOdeweylab/CellOPublic

    CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

    Jupyter Notebook 69 14

  3. SpatialCorrSpatialCorrPublic

    SpatialCorr: Identify gene sets with spatially varying correlation

    Jupyter Notebook 18 4

  4. SpatialCorr-simSpatialCorr-simPublic

    SpatialCorr-sim: Simulate spatial transcriptomics data with spatially varying correlation

    Jupyter Notebook 7 1

  5. immunitastx/monkeybreadimmunitastx/monkeybreadPublic

    Analyzing cellular niches in spatial transcriptomics data

    Python 38 6

  6. hypothesis-driven-SRA-querieshypothesis-driven-SRA-queriesPublic

    Find structured-datasets from within the Sequence Read Archive

    Jupyter Notebook 5 1