gerlichlab

scsHi-C preprocessing Nextflow pipeline

Analysis code for Takacs, Mylarshchikov et al.

A library of general-purpose tools, typically for processing or analysis of data from a sequencing and/or imaging experiment

A `napari` plugin to facilitate interactive viewing of regional barcode spots from `looptrace`

A simple nextflow pipeline for calling peaks and producing tracks from ChIP-seq data

Visualisation (in `napari`) of nuclei from looptrace

Visualisation (in `napari`) of locus-specific spots from looptrace

general GERlich group uTILitieS

Finding FISH spots