Instrument missing D1 methods

[JPeer264]

Description

follow up to #20862

Instrument missing methods of D1: batch, exec and withSession. dump seems to be deprecated and is only valid for v1 databases, where we anyways don't have support.

[linear-code]

JS-2658

[github-actions]

A PR closing this issue has just been released 🚀

This issue was referenced by PR #21292, which was included in the 10.61.0 release.