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Update maximum-likelihood tree models in Quickstart - #25
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Updated model descriptions and added new model for protein alignment.
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Pull request overview
Updates the Quickstart documentation examples for maximum-likelihood tree inference models, including switching the DNA example to a FreeRate-based model and adding a protein-alignment model example.
Changes:
- Updated the DNA maximum-likelihood example model from
GTR+I+GtoGTR+I+R. - Added a new protein maximum-likelihood example using a Pfam-derived amino-acid model.
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| * Infer maximum-likelihood tree using `QC.PFAM+F+I+R` model for protein alignment: | ||
| iqtree -s prot.phy -m QC.PFAM+F+I+R |
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Updated model descriptions and added new model for protein alignment.