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@koszullab@tidyomics

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js2264/README.md

Python & bash

  • momics: Cloud-native storage and query infrastructure for multi-omics data
  • hicstuff: Lightweight library/pipeline to generate and handle Hi-C data
  • instagraal: Large genome reassembly based on Hi-C data
  • metator: Metagenomic binning based on Hi-C data
  • nf-metator: Scalable containerized processing of metagenomic data with metator in nextflow
  • autotinymapper: Email-driven automation wrapper around tinyMapper.sh for maestro HPC
  • tinyMapper: Versatile pipeline to process a variety of genome-wide assays
  • autobcl2fastq: Automatically fetch data from a remote sequencer directory, demultiplex fastq files, trim adaptors and run some preliminary QCs

Bioconductor packages

Doc 📘Bioconductor 🧬Bioc builds ⚙️Github 📦Github checks 🧾Lifecycle 🍃
DoctidyCoverageBioc release:
Release
Bioc devel:
Devel		tidyCoveragerworkflows
DocplyinteractionsBioc release:
Release
Bioc devel:
Devel		plyinteractionsrworkflows
DocOHCABioc release
Bioc devel		OHCArworkflows
DocBiocBookBioc release:
Release
Bioc devel:
Devel		BiocBookrworkflows
DocHiCExperimentBioc release:
Release
Bioc devel:
Devel		HiCExperimentrworkflows
DocHiContactsBioc release:
Release
Bioc devel:
Devel		HiContactsrworkflows
DocHiCoolBioc release:
Release
Bioc devel:
Devel		HiCoolrworkflows
DocHiContactsDataBioc release:
Release
Bioc devel:
Devel		HiContactsDataR-CMD-check-bioc
DocDNAZooDataBioc release:
Release
Bioc devel:
Devel		DNAZooDatarworkflows
DocfourDNDataBioc release:
Release
Bioc devel:
Devel		fourDNDatarworkflows
DocVplotRBioc release:
Release
Bioc devel:
Devel		VplotRrworkflows
DocperiodicDNABioc release:
Release
Bioc devel:
Devel		periodicDNA-

Pinned Loading

  1. OHCAOHCAPublic

    Orchestrating Hi-C analysis with Bioconductor

    TeX 11 2

  2. HiContactsHiContactsPublic

    Analyzing Hi-C data in R with HiCExperiment objects

    R 16 3

  3. BiocBookBiocBookPublic

    R 7 1

  4. plyinteractionsplyinteractionsPublic

    Forked from tidyomics/plyinteractions

    R

  5. tidyCoveragetidyCoveragePublic

    R 24

  6. koszullab/metaTORkoszullab/metaTORPublic

    Metagenomic binning based on Hi-C data

    Python 30 10